TPP:X!Tandem and the TPP

From SPCTools

Contents 1 What is X!Tandem? 2 What is the K-Score? 3 Using X!Tandem and the TPP 4 Running X!Tandem 5 Converting X!Tandem data for the TPP

What is X!Tandem?

X!Tandem is an open-source (and free) search engine, developed by the GPM.

What is the K-Score?

Using X!Tandem and the TPP

This page is intended to give instructions for various ways of working with X!Tandem and the TPP.

Running X!Tandem

Someone could contribute info on setting up the params file for Tandem here..

Converting X!Tandem data for the TPP

How to run Tandem2XML, issues with PeptideProphet modeling, etc...