User contributions
From SPCTools
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- 02:15, 21 January 2009 (hist) (diff) m Building Peptide Atlas
- 02:14, 21 January 2009 (hist) (diff) Building Peptide Atlas (→Gather all peptides and update probabilities)
- 02:07, 21 January 2009 (hist) (diff) Building Peptide Atlas (→Combine ''all'' pepXML files for project using iProphet, then run ProteinProphet)
- 02:02, 21 January 2009 (hist) (diff) m Building Peptide Atlas (→If you ran multiple search engines for each experiment, combine ''per experiment'' using iProphet.)
- 02:00, 21 January 2009 (hist) (diff) Building Peptide Atlas (recommend search against decoys)
- 01:57, 21 January 2009 (hist) (diff) m Building Peptide Atlas (→Build a SpectraST library from the build (optional))
- 01:56, 21 January 2009 (hist) (diff) m Building Peptide Atlas (→Start with one or more pepXML files for each experiment in each project.)
- 01:56, 21 January 2009 (hist) (diff) m Building Peptide Atlas (→Start with one or more pepXML files for each experiment in each project.)
- 01:55, 21 January 2009 (hist) (diff) m Building Peptide Atlas (→Gather all peptides and update probabilities)
- 19:47, 16 January 2009 (hist) (diff) Terry's compbio links (→General programming stuff)
- 19:47, 16 January 2009 (hist) (diff) Terry's compbio links (→General programming stuff)
- 19:46, 16 January 2009 (hist) (diff) Terry's compbio links (→General programming stuff)
- 18:53, 13 January 2009 (hist) (diff) Terry's blog (→Ideas for reducing the false positive rate in Peptide Atlas) (top)
- 18:48, 13 January 2009 (hist) (diff) Terry's blog (→Ideas for reducing the false positive rate in Peptide Atlas)
- 18:08, 13 January 2009 (hist) (diff) Building Peptide Atlas (→Compile statistics on the peptides and proteins in the build)
- 20:17, 9 January 2009 (hist) (diff) Software:ProteinProphet (→Options still under development) (top)
- 21:31, 8 January 2009 (hist) (diff) Terry's compbio links (→General computational biology stuff)
- 21:06, 8 January 2009 (hist) (diff) Terry's compbio links (→General computational biology stuff)
- 19:31, 6 January 2009 (hist) (diff) Terry's compbio links (→General programming stuff)
- 00:45, 6 January 2009 (hist) (diff) Terry's compbio links (→General computational biology stuff)
- 00:43, 6 January 2009 (hist) (diff) Terry's compbio links (→General computational biology stuff)
- 00:32, 6 January 2009 (hist) (diff) Terry's compbio links (→General computational biology stuff)
- 00:29, 6 January 2009 (hist) (diff) Terry's compbio links (→General computational biology stuff)
- 00:25, 6 January 2009 (hist) (diff) Building Peptide Atlas (→Start with one or more pepXML files for each experiment in each project.)
- 00:24, 6 January 2009 (hist) (diff) Building Peptide Atlas (→Start with one or more pepXML files for each experiment in each project.)
- 00:23, 6 January 2009 (hist) (diff) Building Peptide Atlas (→If you ran multiple search engines for each experiment, combine ''per experiment'' using iProphet.)
- 20:51, 29 December 2008 (hist) (diff) Building Peptide Atlas (→Combine ''all'' pepXML files for project using iProphet, then run ProteinProphet)
- 00:01, 24 December 2008 (hist) (diff) Building Peptide Atlas (→Start with one or more pepXML files for each experiment in each project.)
- 00:00, 24 December 2008 (hist) (diff) Building Peptide Atlas (→Obtain search batch IDs for each experiment and create an experiments list.)
- 23:58, 23 December 2008 (hist) (diff) m Building Peptide Atlas (→Update empirical proteotypic scores)
- 23:57, 23 December 2008 (hist) (diff) m Building Peptide Atlas (→Combine ''all'' pepXML files for project using iProphet, then run ProteinProphet)
- 21:08, 19 December 2008 (hist) (diff) Building Peptide Atlas (→Compile statistics on the peptides and proteins in the build)
- 20:00, 19 December 2008 (hist) (diff) m Building Peptide Atlas (→Update empirical proteotypic scores)
- 18:50, 19 December 2008 (hist) (diff) Building Peptide Atlas (→Update empirical proteotypic scores)
- 18:47, 19 December 2008 (hist) (diff) Building Peptide Atlas
- 18:44, 19 December 2008 (hist) (diff) Building Peptide Atlas
- 23:07, 16 December 2008 (hist) (diff) m Terry's compbio links (→Proteomics stuff)
- 23:06, 16 December 2008 (hist) (diff) m Terry's compbio links
- 23:06, 16 December 2008 (hist) (diff) Terry's compbio links (→Proteomics stuff)
- 23:02, 16 December 2008 (hist) (diff) Terry's compbio links (→ISB specific stuff)
- 18:43, 16 December 2008 (hist) (diff) Terry's compbio links (→ISB specific stuff)
- 18:05, 15 December 2008 (hist) (diff) m Building Peptide Atlas (→Register projects and experiments using SBEAMS interface.)
- 18:00, 15 December 2008 (hist) (diff) Software:ProteinProphet
- 22:06, 12 December 2008 (hist) (diff) m Software:ProteinProphet (→Protein Groups)
- 22:05, 12 December 2008 (hist) (diff) Software:ProteinProphet (→protXML output format)
- 21:29, 12 December 2008 (hist) (diff) Software:ProteinProphet (→Caution for large datasets)
- 21:25, 12 December 2008 (hist) (diff) Software:ProteinProphet (→Usage)
- 21:10, 12 December 2008 (hist) (diff) Software:ProteinProphet
- 20:57, 12 December 2008 (hist) (diff) Terry's compbio links (→ISB specific stuff)
- 17:36, 11 December 2008 (hist) (diff) Terry's compbio links (→General programming stuff)
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