PeptideAtlas software

From SPCTools

The core data in PeptideAtlas is a large set of peptides organized into individual builds according to organism and sample type (for example, Yeast, Human Plasma, or Human Glycocapture). A peptide may belong to multiple builds.

$SBEAMS below refers to /net/dblocal/www/html/sbeams (as of June 16, 2009).

Creating a PeptideAtlas build

A collection of csh, bash, and perl scripts, plus various text, XML, and csv files, all outlined in Building Peptide Atlas.

Loading PeptideAtlas

A collection of perl scripts, all or most of which execute SQL queries on the db.systemsbiology.org SBEAMS database.

Displaying PeptideAtlas via web interface

Perl scripts, mostly in $SBEAMS/cgi/PeptideAtlas.