TPP:4.1 Release Notes

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TPP 4.1 Release Notes

To developers: Please add anything you want to be sent out here. I'll take out the author attribution in the actual announcement.

(from Luis:)

  • Added options to protxml2html to write out HTML or Excel (tab-delimited) from command line;
  • New file downloading tool, fileDownloader.pl, with (optional) md5 verification and unzip;
  • Added tar (to windows distro);
  • Apache defaults to 5-hour timeout;
  • In Petunia:
    • New page for management (download) of Spectral Libraries;
    • New page to generate Libra condition files - for up to 8 channels,(with updated isotopic correction factors);
    • Fixed bug when generating xtandem xml input file;
    • Option to pre-run generation of ProteinProphet results in html format;
    • Support for other mzXML converters: mzWiff, massWolf, and trapper (not all options yet);
    • Launch plot-msms when viewing spectra (instead of former dtaviewer);
    • Misc options for MzXML2Search.

(From Natalie)

  • Spectrum Viewer updated to automatically select appropriate ion series for display
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