Software:SWATHProphet

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Contents

Overview

 SWATH Prophet is a software tool for the analysis of SWATH (DIA) data.


Manuscript 

Automated Validation of Results and Removal of Fragment Ion Interferences in Targeted Analysis of Data Independent Acquisition MS using SWATHProphet, Molecular and Cellular Proteomics, in press.

Obtaining the software

     Via SVN:
         - website: https://sourceforge.net/p/sashimi/code/HEAD/tree/trunk/SWATHProphet/
         - export: svn export https://svn.code.sf.net/p/sashimi/code/trunk/SWATHProphet SWATHProphet

     Via HTTP:
         - https://sourceforge.net/projects/sashimi/files/SWATHProphet/


Running the software

     There is a tutorial checked into the codebase, which can be obtained as outlined above. The tutorial can also be downloaded directlyhere .

     The dataset used in the example can be downloaded from SWATH Atlas here


Author

  Andy Keller
Retrieved from "http://tools.proteomecenter.org/wiki/index.php?title=Software:SWATHProphet"
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