From SPCTools

Testing of MSconvert is in progress and results will be posted here as they come.

Msconvert can convert successfully to mzML. However, it does not work for mzXML fully. Trapper can convert to mzXML only.

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Contents 1 Agilent 1.1 trapper 1.1.1 mzXML 1.2 msconvert 1.2.1 mzXML 1.2.2 mzML 2 Thermo 2.1 ReAdW 2.2 msconvert 2.2.1 mzXML 2.2.2 mzML 3 MDS/Sciex for ABI and Agilent 3.1 mzWiff 3.2 msconvert 3.2.1 mzXML 3.2.2 mzML

Agilent

Raw file type: .d directory
raw-to-mzXML converter: trapper

trapper

mzXML

Conversion: OK
X!Tandem search:
TPP:

msconvert

mzXML

Conversion: produces truncated file
X!Tandem search:
TPP:

mzML

Conversion: OK
X!Tandem search:
TPP:

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Thermo

Raw file type: .RAW file
raw-to-mzXML converter: ReAdW

ReAdW

Conversion:
X!Tandem search:
TPP:

msconvert

mzXML

Conversion:
X!Tandem search:
TPP:

mzML

Conversion:
X!Tandem search:
TPP:

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MDS/Sciex for ABI and Agilent

Raw file type: .wiff file
raw-to-mzXML converter: mzWiff

mzWiff

Conversion:
X!Tandem search:
TPP:

msconvert

mzXML

Conversion:
X!Tandem search:
TPP:

mzML

Conversion:
X!Tandem search:
TPP: