Software:SWATHProphet
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| ''Automated Validation of Results and Removal of Fragment Ion Interferences in Targeted Analysis of Data Independent Acquisition MS using SWATHProphet'' | ''Automated Validation of Results and Removal of Fragment Ion Interferences in Targeted Analysis of Data Independent Acquisition MS using SWATHProphet'' | ||
| - | '''Molecular and Cellular Proteomics 2015''', in press. | + | '''Molecular and Cellular Proteomics''', 2015 Dec 24. pii: mcp.M115.054478. |
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| ==Obtaining the software== | ==Obtaining the software== | ||
Revision as of 03:19, 9 January 2016
Contents |
Overview
SWATH Prophet is a software tool for the analysis of SWATH (DIA) data.
Manuscript
Automated Validation of Results and Removal of Fragment Ion Interferences in Targeted Analysis of Data Independent Acquisition MS using SWATHProphet
Molecular and Cellular Proteomics, 2015 Dec 24. pii: mcp.M115.054478.
Obtaining the software
Via SVN:
- website: https://sourceforge.net/p/sashimi/code/HEAD/tree/trunk/SWATHProphet/
- export: svn export https://svn.code.sf.net/p/sashimi/code/trunk/SWATHProphet SWATHProphet
Via HTTP:
- https://sourceforge.net/projects/sashimi/files/SWATHProphet/
Running the software
There is a tutorial checked into the codebase, which can be obtained as outlined above. The tutorial can also be downloaded directly here .
The dataset used in the example can be downloaded from SWATH Atlas here
