Software:SWATHProphet

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	==Manuscript ==		==Manuscript ==
-	''"Automated Validation of Results and Removal of Fragment Ion Interferences in Targeted Analysis of Data	+	Automated Validation of Results and Removal of Fragment Ion Interferences in Targeted Analysis of Data
-	Independent Acquisition MS using SWATHProphet"'', Molecular and Cellular Proteomics, in press.	+	Independent Acquisition MS using SWATHProphet, Molecular and Cellular Proteomics, in press.

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Revision as of 22:55, 23 February 2015

  SWATH Prophet is a software tool for the analysis of SWATH (DIA) data.

Contents 1 Manuscript 2 Obtaining the software 3 Running the software 4 Author

Manuscript

 Automated Validation of Results and Removal of Fragment Ion Interferences in Targeted Analysis of Data 

Independent Acquisition MS using SWATHProphet, Molecular and Cellular Proteomics, in press.

Obtaining the software

     Via SVN:
         - website: https://sourceforge.net/p/sashimi/code/HEAD/tree/trunk/SWATHProphet/
         - export: svn export https://svn.code.sf.net/p/sashimi/code/trunk/SWATHProphet SWATHProphet

     Via HTTP:
         - https://sourceforge.net/projects/sashimi/files/SWATHProphet/

Running the software

     There is a tutorial checked into the codebase, which can be obtained as outlined above. The tutorial can also
be downloaded directlyhere .

     The dataset used in the example can be downloaded from SWATH Atlas here

Author

  Andy Keller