Software:SWATHProphet
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| - | Manuscript: ''"Automated Validation of Results and Removal of Fragment Ion Interferences in Targeted Analysis of Data Independent Acquisition MS using SWATHProphet"'', Molecular and Cellular Proteomics, in press. | + | Manuscript: ''"Automated Validation of Results and Removal of Fragment Ion Interferences in Targeted Analysis of Data |
| + | Independent Acquisition MS using SWATHProphet"'', Molecular and Cellular Proteomics, in press. | ||
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| Running the software: | Running the software: | ||
| - | There is a tutorial checked into the codebase, which can be obtained as outlined above. The tutorial can also be downloaded directly[https://sourceforge.net/p/sashimi/code/HEAD/tree/trunk/SWATHProphet/Tutorial.docx here ]. | + | There is a tutorial checked into the codebase, which can be obtained as outlined above. The tutorial can also |
| + | be downloaded directly[https://sourceforge.net/p/sashimi/code/HEAD/tree/trunk/SWATHProphet/Tutorial.docx here ]. | ||
| The dataset used in the example can be downloaded from SWATH Atlas [http://www.swathatlas.org/etc/20130520_urine_1-1.mzXML.gz here] | The dataset used in the example can be downloaded from SWATH Atlas [http://www.swathatlas.org/etc/20130520_urine_1-1.mzXML.gz here] | ||
Revision as of 22:51, 23 February 2015
SWATH Prophet is a software tool for the analysis of SWATH (DIA) data.
Manuscript: "Automated Validation of Results and Removal of Fragment Ion Interferences in Targeted Analysis of Data
Independent Acquisition MS using SWATHProphet", Molecular and Cellular Proteomics, in press.
Obtaining the software:
Via SVN:
- website: https://sourceforge.net/p/sashimi/code/HEAD/tree/trunk/SWATHProphet/
- export: svn export https://svn.code.sf.net/p/sashimi/code/trunk/SWATHProphet SWATHProphet
Via HTTP:
- https://sourceforge.net/projects/sashimi/files/SWATHProphet/
Running the software:
There is a tutorial checked into the codebase, which can be obtained as outlined above. The tutorial can also be downloaded directlyhere .
The dataset used in the example can be downloaded from SWATH Atlas here
Author: Andy Keller
