TPP:4.5.1 SVN Log
From SPCTools
(Difference between revisions)
| Revision as of 17:53, 24 October 2011 JoeS (Talk | contribs) (→Trunk Check Ins As of 10/24/2011) ← Previous diff |
Revision as of 17:53, 24 October 2011 JoeS (Talk | contribs) (→Branch Check Ins As of 10/24/2011) Next diff → |
||
| Line 353: | Line 353: | ||
| = Branch Check Ins As of 10/24/2011 = | = Branch Check Ins As of 10/24/2011 = | ||
| - | <nowiki>Revision: 5566 | + | <nowiki> |
| + | Revision: 5566 | ||
| Author: real_procopio | Author: real_procopio | ||
| Date: 4:10:41 PM, Friday, October 21, 2011 | Date: 4:10:41 PM, Friday, October 21, 2011 | ||
Revision as of 17:53, 24 October 2011
Trunk Check Ins As of 10/24/2011
Revision: 5567 Author: henryhlam Date: 10:16:00 PM, Sunday, October 23, 2011 Message: [SpectraST] High-mass accuracy MS2 support: frag type of CID-QTOF and HCD. Change to shuffleAllPeaks which is used by PTMProphet ---- Modified : /trunk/trans_proteomic_pipeline/src/Search/SpectraST/SpectraSTConstants.hpp Modified : /trunk/trans_proteomic_pipeline/src/Search/SpectraST/SpectraSTCreateParams.cpp Modified : /trunk/trans_proteomic_pipeline/src/Search/SpectraST/SpectraSTPeakList.cpp Modified : /trunk/trans_proteomic_pipeline/src/Search/SpectraST/SpectraSTPeakList.hpp Modified : /trunk/trans_proteomic_pipeline/src/Validation/PTMProphetParser/PTMProphet.cxx Revision: 5565 Author: mhoopmann Date: 3:15:24 PM, Friday, October 21, 2011 Message: Fixed buffer overrun when reading small spectra compressed with zlib (compression increases spectrum size in these cases, hence the overrun). Moved stdint.h to linux build as it is not part of Visual Studio. ---- Modified : /trunk/trans_proteomic_pipeline/src/Parsers/mzParser/mzParser.h Modified : /trunk/trans_proteomic_pipeline/src/Parsers/mzParser/saxmzmlhandler.cpp Modified : /trunk/trans_proteomic_pipeline/src/Parsers/mzParser/saxmzxmlhandler.cpp Revision: 5561 Author: real_procopio Date: 5:24:09 PM, Thursday, October 20, 2011 Message: [Petunia] Added version checking upon login; warn users if using an old version of TPP ---- Modified : /trunk/trans_proteomic_pipeline/CGI/tpp_gui/tpp_gui.pl Revision: 5560 Author: dshteyn Date: 2:56:38 PM, Thursday, October 20, 2011 Message: PTMProphetParser: NEW FEATURES amino acids and mass shifts are users settable as is mz tolerance, improved classification now outperforms ASCORE, EM is now default (new option NOEM). ---- Modified : /trunk/trans_proteomic_pipeline/src/Validation/PTMProphetParser/PTMProphet.cxx Modified : /trunk/trans_proteomic_pipeline/src/Validation/PTMProphetParser/PTMProphet.h Modified : /trunk/trans_proteomic_pipeline/src/Validation/PTMProphetParser/PTMProphetMain.cxx Modified : /trunk/trans_proteomic_pipeline/src/Validation/PTMProphetParser/PTMProphetParser.cxx Modified : /trunk/trans_proteomic_pipeline/src/Validation/PTMProphetParser/PTMProphetParser.h Revision: 5558 Author: henryhlam Date: 2:06:59 AM, Thursday, October 20, 2011 Message: [SpectraST] New clustering algorithm. Saves memory, prevent deep recursion. ---- Modified : /trunk/trans_proteomic_pipeline/src/Search/SpectraST/SpectraSTMzLibIndex.cpp Modified : /trunk/trans_proteomic_pipeline/src/Search/SpectraST/SpectraSTSpLibImporter.cpp Modified : /trunk/trans_proteomic_pipeline/src/Search/SpectraST/SpectraSTSpLibImporter.hpp Revision: 5557 Author: henryhlam Date: 2:01:34 AM, Thursday, October 20, 2011 Message: [SpectraST] Allow import of non-peptide from MSP format ---- Modified : /trunk/trans_proteomic_pipeline/src/Search/SpectraST/SpectraSTMspLibImporter.cpp Revision: 5556 Author: henryhlam Date: 1:59:58 AM, Thursday, October 20, 2011 Message: [SpectraST] Consider all charges when library spectrum has charge 0 ---- Modified : /trunk/trans_proteomic_pipeline/src/Search/SpectraST/SpectraSTQuery.cpp Revision: 5555 Author: henryhlam Date: 1:52:25 AM, Thursday, October 20, 2011 Message: [SpectraST] Allow users to specify their own m/z range for MRM transitions (Q3) ---- Modified : /trunk/trans_proteomic_pipeline/src/Search/SpectraST/SpectraSTCreateParams.cpp Modified : /trunk/trans_proteomic_pipeline/src/Search/SpectraST/SpectraSTCreateParams.hpp Modified : /trunk/trans_proteomic_pipeline/src/Search/SpectraST/SpectraSTPeakList.cpp Modified : /trunk/trans_proteomic_pipeline/src/Search/SpectraST/SpectraSTPeakList.hpp Modified : /trunk/trans_proteomic_pipeline/src/Search/SpectraST/SpectraSTSpLibImporter.cpp Revision: 5553 Author: real_procopio Date: 5:02:11 PM, Wednesday, October 19, 2011 Message: [dta2mzxml] Change 'plustwo' option to include lowest charge state found for a given scan; also make sure output is real mzXML ---- Modified : /trunk/trans_proteomic_pipeline/src/mzXML/converters/dta2mzxml/Dta2mzXML.cpp Modified : /trunk/trans_proteomic_pipeline/src/mzXML/converters/dta2mzxml/Dta2mzXML.h Modified : /trunk/trans_proteomic_pipeline/src/mzXML/converters/dta2mzxml/main.cpp Revision: 5552 Author: eng_jk Date: 12:59:35 PM, Tuesday, October 18, 2011 Message: replicate branch 5551 checkin to trunk for xpress/mzML fix ---- Modified : /trunk/trans_proteomic_pipeline/src/Quantitation/XPress/XPressPeptideUpdateParser/XPressPeptideUpdateParserMain.cxx Modified : /trunk/trans_proteomic_pipeline/src/common/util.cxx Revision: 5548 Author: slagelwa Date: 3:22:56 PM, Friday, October 14, 2011 Message: * Set the default number of threads to 8 for tandem * Include a warning in the comments that values for three differential modifications are always needed ---- Modified : /trunk/trans_proteomic_pipeline/extern/hpctools/grid/templates/sequest.params Modified : /trunk/trans_proteomic_pipeline/extern/hpctools/grid/templates/tandem.params Revision: 5538 Author: henryhlam Date: 12:43:02 AM, Monday, October 10, 2011 Message: [Enzyme] Equate tryptic with trypsin ---- Modified : /trunk/trans_proteomic_pipeline/src/Enzyme/ProteolyticEnzyme/ProteolyticEnzyme.cxx Revision: 5537 Author: henryhlam Date: 12:35:35 AM, Monday, October 10, 2011 Message: [PeptideProphet] More finely divided bins for error rate estimates. Important for modern, large datasets. ---- Modified : /trunk/trans_proteomic_pipeline/src/Validation/MixtureModel/MixtureModel.cxx Revision: 5536 Author: henryhlam Date: 12:32:35 AM, Monday, October 10, 2011 Message: [InterProphet] More finely divided bins for error rate estimates. Important for modern, large datasets. ---- Modified : /trunk/trans_proteomic_pipeline/src/Validation/InterProphet/InterProphetParser/InterProphet.cxx Revision: 5535 Author: henryhlam Date: 12:19:18 AM, Monday, October 10, 2011 Message: [InteractParser] Fix OMSSA's problem with n-term mods ---- Modified : /trunk/trans_proteomic_pipeline/src/Visualization/InteractParser/InteractParser.cxx Revision: 5534 Author: henryhlam Date: 12:12:16 AM, Monday, October 10, 2011 Message: [xinteract] Move RefreshParser ahead of PeptideProphet to safeguard against some search engines' mangling the protein names and/or omitting NTT/NMC ---- Modified : /trunk/trans_proteomic_pipeline/src/Visualization/xinteract/xinteract.cxx Revision: 5533 Author: henryhlam Date: 12:02:43 AM, Monday, October 10, 2011 Message: [Tandem2XML] Fix wrong enzyme specificity for Lys-C ---- Modified : /trunk/trans_proteomic_pipeline/src/Parsers/Algorithm2XML/Tandem2XML/TandemParamsParser.cxx Revision: 5532 Author: henryhlam Date: 11:59:27 PM, Sunday, October 09, 2011 Message: [util] Catch return values for smooth compiling ---- Modified : /trunk/trans_proteomic_pipeline/src/util/calculate_pi.cpp Revision: 5531 Author: henryhlam Date: 11:57:02 PM, Sunday, October 09, 2011 Message: [MzXML2Search] Option to remove charge-reduced precursors for ETD spectra (useful for search engines that do not have that feature) ---- Modified : /trunk/trans_proteomic_pipeline/src/Parsers/MzXML2Search/MzXML2Search.cxx Revision: 5530 Author: henryhlam Date: 10:03:18 PM, Sunday, October 09, 2011 Message: [mzParser] Pound-include stdint.h and catch return values for smooth compiling ---- Modified : /trunk/trans_proteomic_pipeline/src/Parsers/mzParser/mzParser.h Modified : /trunk/trans_proteomic_pipeline/src/Parsers/mzParser/saxmzmlhandler.cpp Modified : /trunk/trans_proteomic_pipeline/src/Parsers/mzParser/saxmzxmlhandler.cpp Revision: 5529 Author: henryhlam Date: 10:00:49 PM, Sunday, October 09, 2011 Message: [util] Catch return values for smooth compiling ---- Modified : /trunk/trans_proteomic_pipeline/src/util/pep_dbcount.cpp Modified : /trunk/trans_proteomic_pipeline/src/util/translateDNA2AA-FASTA.cpp Revision: 5528 Author: eng_jk Date: 2:18:53 PM, Thursday, October 06, 2011 Message: change deflines to include which reading frame as part of accession ---- Modified : /trunk/trans_proteomic_pipeline/src/util/translateDNA2AA-FASTA.cpp Revision: 5527 Author: eng_jk Date: 2:16:52 PM, Thursday, October 06, 2011 Message: additional cleanup of yesterday's xpress buffer overrun fix; mainly changing size of a few allocated arrays which only affects mzML files with with non-sequential native IDs. ---- Modified : /trunk/trans_proteomic_pipeline/src/Quantitation/XPress/XPressPeptideParser/XPressPeptideParser.cxx Modified : /trunk/trans_proteomic_pipeline/src/common/constants.h Revision: 5524 Author: eng_jk Date: 4:36:44 PM, Wednesday, October 05, 2011 Message: quick mod to Patrick's buffer overrun fix (for non-sequential mzML scans) ---- Modified : /trunk/trans_proteomic_pipeline/src/Quantitation/XPress/XPressPeptideParser/XPressPeptideParser.cxx Revision: 5523 Author: ppatrick Date: 2:09:52 PM, Wednesday, October 05, 2011 Message: Added Supplemental Activation Removed 0 intensity peaks ---- Modified : /trunk/trans_proteomic_pipeline/src/mzXML/converters/ReAdW/FilterLine.cpp Modified : /trunk/trans_proteomic_pipeline/src/mzXML/converters/ReAdW/FilterLine.h Modified : /trunk/trans_proteomic_pipeline/src/mzXML/converters/ReAdW/ThermoInterface.cpp Revision: 5522 Author: ppatrick Date: 5:40:47 AM, Wednesday, October 05, 2011 Message: Fixed buffer overrun in void XPressPeptideParser::validate_mzXMLfile() ---- Modified : /trunk/trans_proteomic_pipeline/src/Quantitation/XPress/XPressPeptideParser/XPressPeptideParser.cxx Revision: 5521 Author: ppatrick Date: 5:38:48 AM, Wednesday, October 05, 2011 Message: Fixed buffer overruns in void XPressPeptideParser::parse(const char *xmlfile) and void XPressPeptideParser::validate_mzXMLfile() ---- Modified : /trunk/trans_proteomic_pipeline/src/Quantitation/XPress/XPressPeptideParser/XPressPeptideParser.cxx Revision: 5520 Author: ppatrick Date: 5:35:18 AM, Wednesday, October 05, 2011 Message: Initialized preExt to account for incorrect file names being passed. ---- Modified : /trunk/trans_proteomic_pipeline/src/Parsers/mzParser/RAMPface.cpp Revision: 5519 Author: dshteyn Date: 1:31:11 PM, Tuesday, October 04, 2011 Message: RefreshParser: make RefreshParser mapping of semi and non trypic peptides consistent with the search engine parameters unless overridden on the commandline (per Jimmy's and Vagisha's posts to spctools-dev of Jun 10 2011) ---- Modified : /trunk/trans_proteomic_pipeline/src/Parsers/RefreshParser/RefreshParser.cxx Modified : /trunk/trans_proteomic_pipeline/src/Parsers/RefreshParser/RefreshParserMain.cxx Revision: 5518 Author: ppatrick Date: 12:29:44 PM, Tuesday, October 04, 2011 Message: increased min peptide probability to 0.8 from 0.5 ---- Modified : /trunk/trans_proteomic_pipeline/src/Quantitation/XPress/XPressProteinRatioParser/XPressProteinRatioParser.cxx Revision: 5517 Author: ppatrick Date: 12:28:23 PM, Tuesday, October 04, 2011 Message: Changed logic of xsl to speed up loading. ---- Modified : /trunk/trans_proteomic_pipeline/src/Quantitation/XPress/XPressCGIProteinDisplayParser/XPressCGIProteinDisplay.cxx Revision: 5516 Author: ppatrick Date: 8:57:14 AM, Tuesday, October 04, 2011 Message: Changed from theoretical precursor mass to measured one to allow for narrower tolerances. ---- Modified : /trunk/trans_proteomic_pipeline/src/Quantitation/XPress/XPressPeptideParser/XPressPeptideParser.cxx Revision: 5515 Author: slagelwa Date: 11:58:33 AM, Thursday, September 29, 2011 Message: * now removes the log files before submission * uses new conversion queues * no longer allows submissions with the --server flag and instead uses queues ---- Modified : /trunk/trans_proteomic_pipeline/extern/hpctools/grid/bin/qconvert Revision: 5514 Author: dshteyn Date: 5:04:33 PM, Friday, September 23, 2011 Message: Fix typo ---- Modified : /trunk/trans_proteomic_pipeline/src/Parsers/mzParser/saxmzmlhandler.cpp Revision: 5511 Author: dshteyn Date: 4:20:07 PM, Friday, September 23, 2011 Message: Adding back support for Agilent QTOF mzML ---- Modified : /trunk/trans_proteomic_pipeline/src/Parsers/mzParser/saxmzmlhandler.cpp Revision: 5510 Author: slagelwa Date: 3:28:18 PM, Friday, September 23, 2011 Message: Re-merged 4.5 changes in trunk. SVNTortise didn't list to my "accept branch" changes when I did the merge. (ALSO MEANS that the trunk changes in these two files will likely be lost) ---- Modified : /trunk/trans_proteomic_pipeline/CGI/tpp_gui/tpp_gui.pl Modified : /trunk/trans_proteomic_pipeline/src/Parsers/mzParser/saxmzmlhandler.cpp Revision: 5509 Author: dshteyn Date: 3:04:39 PM, Friday, September 23, 2011 Message: PTMProphet: adding getVal functions for KDModel. ---- Modified : /trunk/trans_proteomic_pipeline/src/Validation/InterProphet/InterProphetParser/KDModel.cxx Modified : /trunk/trans_proteomic_pipeline/src/Validation/InterProphet/InterProphetParser/KDModel.h Revision: 5508 Author: dshteyn Date: 2:36:13 PM, Friday, September 23, 2011 Message: SpectraSTLIB: adding randomization of spectrum function for PTMProphet. ---- Modified : /trunk/trans_proteomic_pipeline/src/Search/SpectraST/SpectraSTLibImporter.cpp Modified : /trunk/trans_proteomic_pipeline/src/Search/SpectraST/SpectraSTPeakList.cpp Modified : /trunk/trans_proteomic_pipeline/src/Search/SpectraST/SpectraSTPeakList.hpp
Branch Check Ins As of 10/24/2011
Revision: 5566 Author: real_procopio Date: 4:10:41 PM, Friday, October 21, 2011 Message: [Petunia] Decoy models pages should only ask for pep/protXML files as input; minor code clean-up and re-formatting ---- Modified : /branches/4-5/trans_proteomic_pipeline/CGI/tpp_gui/tpp_gui.pl Revision: 5564 Author: mhoopmann Date: 3:10:06 PM, Friday, October 21, 2011 Message: Fixed buffer overrun when reading small spectra compressed with zlib (compression increases spectrum size in these cases, hence the overrun). Moved stdint.h to linux build as it is not part of Visual Studio. ---- Modified : /branches/4-5/trans_proteomic_pipeline/src/Parsers/mzParser/mzParser.h Modified : /branches/4-5/trans_proteomic_pipeline/src/Parsers/mzParser/saxmzmlhandler.cpp Modified : /branches/4-5/trans_proteomic_pipeline/src/Parsers/mzParser/saxmzxmlhandler.cpp Revision: 5563 Author: real_procopio Date: 1:40:59 PM, Friday, October 21, 2011 Message: [Petunia] Added support for Bruker .yep and .baf files, as well as mzXML output to msconvert; Expanded Libra normalization channel option to 8 ---- Modified : /branches/4-5/trans_proteomic_pipeline/CGI/tpp_gui/tpp_gui.pl Revision: 5562 Author: real_procopio Date: 5:27:40 PM, Thursday, October 20, 2011 Message: [Petunia] merging rev 5561 from trunk ---- Modified : /branches/4-5/trans_proteomic_pipeline/CGI/tpp_gui/tpp_gui.pl Revision: 5559 Author: real_procopio Date: 12:20:06 PM, Thursday, October 20, 2011 Message: merging trunk changes from rev 5553 ---- Modified : /branches/4-5/trans_proteomic_pipeline/src/mzXML/converters/dta2mzxml/Dta2mzXML.cpp Modified : /branches/4-5/trans_proteomic_pipeline/src/mzXML/converters/dta2mzxml/Dta2mzXML.h Modified : /branches/4-5/trans_proteomic_pipeline/src/mzXML/converters/dta2mzxml/main.cpp Revision: 5554 Author: henryhlam Date: 1:36:19 AM, Thursday, October 20, 2011 Message: [SpectraST] Allow users to specify their own m/z range for MRM transitions (Q3) ---- Modified : /branches/4-5/trans_proteomic_pipeline/src/Search/SpectraST/SpectraSTCreateParams.cpp Modified : /branches/4-5/trans_proteomic_pipeline/src/Search/SpectraST/SpectraSTCreateParams.hpp Modified : /branches/4-5/trans_proteomic_pipeline/src/Search/SpectraST/SpectraSTPeakList.cpp Modified : /branches/4-5/trans_proteomic_pipeline/src/Search/SpectraST/SpectraSTPeakList.hpp Modified : /branches/4-5/trans_proteomic_pipeline/src/Search/SpectraST/SpectraSTSpLibImporter.cpp Revision: 5551 Author: eng_jk Date: 12:14:31 PM, Tuesday, October 18, 2011 Message: Fix for mzML files when viewing xpress chromatograms through the ProteinProphet to XPressCGIProteinDisplayParser.cgi binary. No notion of file extensions exist in that path and mzXML files were always assumed. This fix simply has the cgi try mzML file extension if the mzXML file is not found. ---- Modified : /branches/4-5/trans_proteomic_pipeline/src/Quantitation/XPress/XPressPeptideUpdateParser/XPressPeptideUpdateParserMain.cxx Modified : /branches/4-5/trans_proteomic_pipeline/src/common/util.cxx Revision: 5550 Author: slagelwa Date: 2:41:42 PM, Monday, October 17, 2011 Message: Cut&paste in cygwin inserted newline ---- Modified : /branches/4-5/trans_proteomic_pipeline/extern/xtandem/src_merged/msequenceserver.cpp Revision: 5549 Author: slagelwa Date: 2:31:27 PM, Monday, October 17, 2011 Message: Increased size of buffer for holding fasta header lines as per recommendation by David Trudgian. ---- Modified : /branches/4-5/trans_proteomic_pipeline/extern/xtandem/src/msequenceserver.cpp Modified : /branches/4-5/trans_proteomic_pipeline/extern/xtandem/src_cyclone/msequenceserver.cpp Modified : /branches/4-5/trans_proteomic_pipeline/extern/xtandem/src_merged/msequenceserver.cpp Revision: 5547 Author: henryhlam Date: 10:48:06 PM, Monday, October 10, 2011 Message: [PeptideProphet] More finely divided bins for error rate estimates. Important for modern, large datasets. (trunk r5537) ---- Modified : /branches/4-5/trans_proteomic_pipeline/src/Validation/MixtureModel/MixtureModel.cxx Revision: 5546 Author: henryhlam Date: 8:30:09 PM, Monday, October 10, 2011 Message: [InterProphet] More finely divided bins for error rate estimates. Important for modern, large datasets. (trunk r5536) ---- Modified : /branches/4-5/trans_proteomic_pipeline/src/Validation/InterProphet/InterProphetParser/InterProphet.cxx Revision: 5545 Author: henryhlam Date: 8:27:17 PM, Monday, October 10, 2011 Message: [Enzyme] Equate tryptic with trypsin (trunk r5538) ---- Modified : /branches/4-5/trans_proteomic_pipeline/src/Enzyme/ProteolyticEnzyme/ProteolyticEnzyme.cxx Revision: 5544 Author: henryhlam Date: 8:25:26 PM, Monday, October 10, 2011 Message: [InteractParser] Fix OMSSA's problem with n-term mods (trunk r5535) ---- Modified : /branches/4-5/trans_proteomic_pipeline/src/Visualization/InteractParser/InteractParser.cxx Revision: 5543 Author: henryhlam Date: 8:23:42 PM, Monday, October 10, 2011 Message: Move RefreshParser ahead of PeptideProphet to safeguard against some search engines' mangling the protein names and/or omitting NTT/NMC (trunk r5534) ---- Modified : /branches/4-5/trans_proteomic_pipeline/src/Visualization/xinteract/xinteract.cxx Revision: 5542 Author: henryhlam Date: 8:18:11 PM, Monday, October 10, 2011 Message: [Tandem2XML] Fix wrong enzyme specificity for Lys-C (trunk r5533) ---- Modified : /branches/4-5/trans_proteomic_pipeline/src/Parsers/Algorithm2XML/Tandem2XML/TandemParamsParser.cxx Revision: 5541 Author: henryhlam Date: 8:15:16 PM, Monday, October 10, 2011 Message: [util] Catch return values for smooth compiling (trunk r5532) ---- Modified : /branches/4-5/trans_proteomic_pipeline/src/util/calculate_pi.cpp Modified : /branches/4-5/trans_proteomic_pipeline/src/util/pep_dbcount.cpp Modified : /branches/4-5/trans_proteomic_pipeline/src/util/translateDNA2AA-FASTA.cpp Revision: 5540 Author: henryhlam Date: 8:12:27 PM, Monday, October 10, 2011 Message: [mzParser] Pound-include stdint.h and catch return values for smooth compiling (trunk r5530) ---- Modified : /branches/4-5/trans_proteomic_pipeline/src/Parsers/mzParser/mzParser.h Modified : /branches/4-5/trans_proteomic_pipeline/src/Parsers/mzParser/saxmzmlhandler.cpp Modified : /branches/4-5/trans_proteomic_pipeline/src/Parsers/mzParser/saxmzxmlhandler.cpp Revision: 5539 Author: henryhlam Date: 8:08:54 PM, Monday, October 10, 2011 Message: [SpectraST] Fix rare error when S/N calculation failed due to too few peaks outside precursor region (trunk r5501) ---- Modified : /branches/4-5/trans_proteomic_pipeline/src/Search/SpectraST/SpectraSTPeakList.cpp Revision: 5526 Author: eng_jk Date: 2:14:46 PM, Thursday, October 06, 2011 Message: additional cleanup of yesterday's xpress buffer overrun fix; mainly changing size of a few allocated arrays which only affects mzML files with with non-sequential native IDs. ---- Modified : /branches/4-5/trans_proteomic_pipeline/src/Quantitation/XPress/XPressPeptideParser/XPressPeptideParser.cxx Modified : /branches/4-5/trans_proteomic_pipeline/src/common/constants.h Revision: 5525 Author: eng_jk Date: 4:42:41 PM, Wednesday, October 05, 2011 Message: quick mod to Patrick's buffer overrun fix (for non-sequential mzML scans); adding to 4.5 branch ---- Modified : /branches/4-5/trans_proteomic_pipeline/src/Quantitation/XPress/XPressPeptideParser/XPressPeptideParser.cxx Revision: 5513 Author: dshteyn Date: 5:04:04 PM, Friday, September 23, 2011 Message: Fix typo ---- Modified : /branches/4-5/trans_proteomic_pipeline/src/Parsers/mzParser/saxmzmlhandler.cpp Revision: 5512 Author: dshteyn Date: 4:24:14 PM, Friday, September 23, 2011 Message: support for Agilent QTOF mzML ---- Modified : /branches/4-5/trans_proteomic_pipeline/src/Parsers/mzParser/saxmzmlhandler.cpp
