PeptideAtlas:Chromosomal coverage
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| In order to get such a depiction, one must restrict the listing to proteins from only a single chromosome. | In order to get such a depiction, one must restrict the listing to proteins from only a single chromosome. | ||
| ==Interpreting the graphical depiction== | ==Interpreting the graphical depiction== | ||
| - | blah blah blah | + | The graphical depiction has a title bar and five tracks of information. The title bar shows which chromosome is being viewed, and what portion of the chromosome is shown. The five informational tracks are from top to bottom "Protein Location", "Chromosome Length", "Karyotypic Banding", "Genes covered by PeptideAtlas", and "Gene Location". "Chromosome Length" is a ruler so that you can know at which base pair a protein or gene is located. "Karyotypic Banding" shows a similar relationship, except with chromosomal banding instead base pairs. The other three tracks depict the location of proteins, genes, and those genes that contain a PeptideAtlas protein. |
Revision as of 19:16, 10 August 2010
When using the Browse Proteins function in PeptideAtlas, one can generate a graphical depiction of the chromosomal coverage for an atlas build.
Listing proteins
In order to get such a depiction, one must restrict the listing to proteins from only a single chromosome.
Interpreting the graphical depiction
The graphical depiction has a title bar and five tracks of information. The title bar shows which chromosome is being viewed, and what portion of the chromosome is shown. The five informational tracks are from top to bottom "Protein Location", "Chromosome Length", "Karyotypic Banding", "Genes covered by PeptideAtlas", and "Gene Location". "Chromosome Length" is a ruler so that you can know at which base pair a protein or gene is located. "Karyotypic Banding" shows a similar relationship, except with chromosomal banding instead base pairs. The other three tracks depict the location of proteins, genes, and those genes that contain a PeptideAtlas protein.
