TPP 4.3.1: Installing on Ubuntu 10.04

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Revision as of 18:08, 20 May 2010 Jesse j (Talk | contribs) (→Installation Procedure) ← Previous diff		Revision as of 02:52, 24 July 2010 Tkwon (Talk | contribs) (→Debugging) Next diff →
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	* If Make reports an error in saxhandler.h, add "#include <stdint.h>" (Without the quotation marks) to the top of the saxhandler.h file.		* If Make reports an error in saxhandler.h, add "#include <stdint.h>" (Without the quotation marks) to the top of the saxhandler.h file.
		+	** src/Parsers/Algorithm2XML/saxhandler.h
		+	** extern/xtandem/src/saxhandler.h

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Revision as of 02:52, 24 July 2010

Installation Procedure

• If you don't have subversion, do: sudo aptitude install subversion

Note: This is not the only way to install TPP, and these instructions have not yet been tested by other users.

#If admin permission is needed, enter the command: sudo bash
cd /usr/local/src/
svn co https://sashimi.svn.sourceforge.net/svnroot/sashimi/tags/release_4-3-1/trans_proteomic_pipeline/
cd trans_proteomic_pipeline/installer_linux/
sh ./install-prerequisites-ubuntu-9_04.sh

cd ../src/
make
make install

Debugging

• If Make reports an error in saxhandler.h, add "#include <stdint.h>" (Without the quotation marks) to the top of the saxhandler.h file.
  • src/Parsers/Algorithm2XML/saxhandler.h
  • extern/xtandem/src/saxhandler.h