PeptideAtlas software
From SPCTools
(Difference between revisions)
Revision as of 19:48, 16 June 2009
The core data in PeptideAtlas is a large set of peptides organized into individual builds according to organism and sample type (for example, Yeast, Human Plasma, or Human Glycocapture). A peptide may belong to multiple builds.
$SBEAMS below refers to /net/dblocal/www/html/sbeams (as of June 16, 2009).
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Creating a PeptideAtlas build
A collection of csh, bash, and perl scripts, plus various text, XML, and csv files, all outlined in Building Peptide Atlas.
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Loading PeptideAtlas
A collection of perl scripts, all or most of which execute SQL queries on the db.systemsbiology.org SBEAMS database.
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Displaying PeptideAtlas via web interface
Perl scripts, mostly in $SBEAMS/cgi/PeptideAtlas.
