Software:RemoteConvert

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-xmlns:o="urn:schemas-microsoft-com:office:office"+Convert the raw file remotely.
-xmlns:w="urn:schemas-microsoft-com:office:word"+
-xmlns="http://www.w3.org/TR/REC-html40">+
-<head>+Description
-<meta http-equiv=Content-Type content="text/html; charset=windows-1252">+Because several conversion programs depend on Windows-only vendor libraries from different manufacture, this software will enable you converting your raw files in you local machine without logging in to remote window machine.
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- <o:Created>2009-02-27T20:25:00Z</o:Created>+
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-<body lang=EN-US link="#002BB8" vlink=purple style='tab-interval:.5in'>+Requirements
 +The following is a list of software need to be installed in window machine before you can convert each type of the raw file.
 +Raw file type Raw-to-mzXML/mzML converter Software
 +.RAW file ReAdw
 +Thermo's XCalibur software
 +raw dir massWolf
 +Waters' MassLynx software
 +.Wiff file mzWiff
 +Analyst software
 +.Wiff file ML_Exporter
 +.baf file CompassXport CompassXport, produced by Bruker
-<div class=Section1> 
-<div style='mso-element:para-border-div;border:none;border-bottom:solid #AAAAAA 1.0pt;+How to use it:
-mso-border-bottom-alt:solid #AAAAAA .75pt;padding:0in 0in 2.0pt 0in;background:+
-white'>+
-<h1 style='margin-bottom:1.2pt;line-height:18.0pt;background:white'><b+Suppose the remote window machine is named R machine. The local linux machine is named L machine.
-style='mso-bidi-font-weight:normal'><span lang=EN style='font-size:11.0pt;+On R machine:
-font-family:Arial;mso-ansi-language:EN'>Software: <span class=SpellE>RemoteConvert</span><o:p></o:p></span></b></h1>+mkdir C:\convert
 +Download converter executable and save into C:\convert
 +Download RemoteConvertServer.pl and lib dir, and save into C:\convert
 +Download 7-zip, unzip and save it into C:\convert\7-zip
 +cd C:\convert
 +perl RemoteConvertServer.pl
 +On L machine:
 +Download remoteconvert.pl and save into some dir.
 +./ remoteconvert.pl : show some examples command to run the software.
 +./ remoteconvert.pl –showoptions: show all options available for each converter
-</div>+Install RemoteConvert as service:
-<p class=MsoNormal style='margin-bottom:.05in;line-height:18.0pt;mso-outline-level:+The service will stop if the user session is time out or the window machine is restarted. I complied the perl code into a executable using triall version of perl2exe, and installed it as service on a window 2000 and a window server 2003 sucessfully, thus the service will keep running without user log in and restart by itself after the computer restarts.
-4;background:white'><b><span lang=EN style='font-size:11.0pt;font-family:Arial;+Instructions on install user defined service:
-color:black;display:none;mso-hide:all;mso-ansi-language:EN'>From SPCTools<o:p></o:p></span></b></p>+Use perl2exe or other software to convert the perl program (server side) to exectuable.
 + Suppose your perl executable is located in C:\convert
 +1. Download and install resource kit tool from Microsoft website according to which version of window machine you have.
 +Window server 2003:
 + http://www.microsoft.com/downloads/details.aspx?FamilyID=9D467A69-57FF-4AE7-96EE-B18C4790CFFD&displaylang=en
 + Window 2000:
 + http://www.microsoft.com/downloads/details.aspx?displaylang=en&FamilyID=3e89879d-6c0b-4f92-96c4-1016c187d429
 + Alternatively if you can get INSTSRV.EXE and SRVANY.EXE somewhere, you don’t need to install the whole resource kit.
 +Suppose these two executable is located in “C:\reskit”
 +2. At a MS-DOS command prompt(running CMD.EXE), type the following command:
 +C:\reskit\INSTSRV.EXE RemoteConvert C:\reskit\SRVANY.EXE
 +3. Run Registry Editor (start|run|regedit) and locate the following subkey:
 + HKEY_LOCAL_MACHINE\SYSTEM\CurrentControlSet\Services\RemoteConvert
 + a. From the Edit menu, click New Key. Type the following and click OK:
 + Key Name: Parameters
 + Class : <leave blank>
 + b. Select the Parameters key.
 + From the Edit menu, click New Value. Type the following and click OK:
 + Value Name: Application
 + Data Type: REG_SZ
 + String: C:\convert\RemoteConvertServer.exe
 + b. Select the Parameters key
 + From the Edit menu, click New Value. Type the following and click OK:
 + Value Name: AppDirectory
 + Data Type: REG_SZ
 + String: C:\convert
 + d. Close Registry Editor.
 +4: start the service
 + control panel -> administrative tool -> component service
 + Find the "RemoteConvert"
 + Click it
 + on popup window, click start
-<p class=MsoNormal style='line-height:18.0pt;background:white'><span lang=EN+Getting the software:
-style='font-size:11.0pt;font-family:Arial;color:black;display:none;mso-hide:+This software is included in the current TPP distribution.
-all;mso-ansi-language:EN'>Jump to: <a+Additional methods for obtaining the software are:
-href="http://tools.proteomecenter.org/wiki/index.php?title=Software:ReAdW#column-one#column-one"><span+ Download from SourceForge Sashimi project file release: [1]
-style='color:black'>navigation</span></a>, <a+ Browse sourcecode from on Sashimi project SVN[2].
-href="http://tools.proteomecenter.org/wiki/index.php?title=Software:ReAdW#searchInput#searchInput"><span+
-style='color:black'>search</span></a><o:p></o:p></span></p>+
- +
-<!-- start content -->+
- +
-<p class=MsoNormal style='line-height:18.0pt;background:white'><span lang=EN+
-style='font-size:11.0pt;font-family:Arial;color:black;mso-ansi-language:EN'>Convert+
-the raw file remotely. <a name=Description></a><o:p></o:p></span></p>+
- +
-<p class=MsoNormal style='line-height:18.0pt;background:white'><span lang=EN+
-style='font-size:11.0pt;font-family:Arial;color:black;mso-ansi-language:EN'><o:p>&nbsp;</o:p></span></p>+
- +
-<div style='mso-element:para-border-div;border:none;border-bottom:solid #AAAAAA 6.0pt;+
-padding:0in 0in 2.0pt 0in;background:white'>+
- +
-<p class=MsoNormal style='margin-bottom:.1in;line-height:18.0pt;mso-outline-level:+
-3;background:white;border:none;mso-border-bottom-alt:solid #AAAAAA 6.0pt;+
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-normal'><span lang=EN style='font-size:11.0pt;font-family:Arial;color:black;+
-mso-ansi-language:EN'>Description<o:p></o:p></span></b></p>+
- +
-</div>+
- +
-<p style='background:white'><a name="Current_Version"></a><a name=Requirements></a><span+
-lang=EN style='font-size:11.0pt;font-family:Arial;color:black;mso-ansi-language:+
-EN'>Because several conversion programs depend on Windows-only vendor libraries+
-from different manufacture, this software will enable you converting your raw+
-files in you local machine without logging in to remote window machine.<o:p></o:p></span></p>+
- +
-<p style='background:white'><span lang=EN style='font-size:11.0pt;font-family:+
-Arial;color:black;mso-ansi-language:EN'><o:p>&nbsp;</o:p></span></p>+
- +
-<div style='mso-element:para-border-div;border:none;border-bottom:solid #AAAAAA 6.0pt;+
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- +
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-3;background:white;border:none;mso-border-bottom-alt:solid #AAAAAA 6.0pt;+
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-normal'><span lang=EN style='font-size:11.0pt;font-family:Arial;color:black;+
-mso-ansi-language:EN'>Requirements<o:p></o:p></span></b></p>+
- +
-</div>+
- +
-<p style='background:white'><span lang=EN style='font-size:11.0pt;font-family:+
-Arial;color:black;mso-ansi-language:EN'>The following is a list of software+
-need to be installed in window machine before you can convert each type of the+
-raw file.<o:p></o:p></span></p>+
- +
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- +
- <p style='mso-element:frame;mso-element-frame-hspace:9.0pt;mso-element-wrap:+
- around;mso-element-anchor-vertical:paragraph;mso-element-anchor-horizontal:+
- column;mso-element-top:.05pt;mso-height-rule:exactly'><span lang=EN+
- style='font-size:11.0pt;font-family:Arial;color:black;mso-ansi-language:EN'>Raw+
- file type<o:p></o:p></span></p>+
- </td>+
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- border-left:none;mso-border-left-alt:solid windowtext .5pt;mso-border-alt:+
- solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>+
- <p style='mso-element:frame;mso-element-frame-hspace:9.0pt;mso-element-wrap:+
- around;mso-element-anchor-vertical:paragraph;mso-element-anchor-horizontal:+
- column;mso-element-top:.05pt;mso-height-rule:exactly'><span lang=EN+
- style='font-size:11.0pt;font-family:Arial;color:black;mso-ansi-language:EN'>Raw-to-<span+
- class=SpellE>mzXML/mzML</span> converter<o:p></o:p></span></p>+
- </td>+
- <td width=276 valign=top style='width:207.0pt;border:solid windowtext 1.0pt;+
- border-left:none;mso-border-left-alt:solid windowtext .5pt;mso-border-alt:+
- solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>+
- +
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- around;mso-element-anchor-vertical:paragraph;mso-element-anchor-horizontal:+
- column;mso-element-top:.05pt;mso-height-rule:exactly'><span lang=EN+
- style='font-size:11.0pt;font-family:Arial;color:black;mso-ansi-language:EN'>Software<o:p></o:p></span></p>+
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- file<o:p></o:p></span></p>+
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- +
- <p style='mso-element:frame;mso-element-frame-hspace:9.0pt;mso-element-wrap:+
- around;mso-element-anchor-vertical:paragraph;mso-element-anchor-horizontal:+
- column;mso-element-top:.05pt;mso-height-rule:exactly'><span lang=EN+
- style='font-size:11.0pt;font-family:Arial;color:navy;mso-ansi-language:EN'><a+
- href="http://sourceforge.net/project/showfiles.php?group_id=69281&amp;package_id=68160"><span+
- class=SpellE><span style='color:navy'>ReAdw</span></span></a><o:p></o:p></span></p>+
- </td>+
- <td width=276 valign=top style='width:207.0pt;border-top:none;border-left:+
- none;border-bottom:solid windowtext 1.0pt;border-right:solid windowtext 1.0pt;+
- mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;+
- mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>+
- <p style='background:white;mso-element:frame;mso-element-frame-hspace:9.0pt;+
- mso-element-wrap:around;mso-element-anchor-vertical:paragraph;mso-element-anchor-horizontal:+
- column;mso-element-top:.05pt;mso-height-rule:exactly'><span class=SpellE><span+
- lang=EN style='font-size:11.0pt;font-family:Arial;color:black;mso-ansi-language:+
- EN;mso-bidi-font-weight:bold'>Thermo's</span></span><span lang=EN+
- style='font-size:11.0pt;font-family:Arial;color:black;mso-ansi-language:EN;+
- mso-bidi-font-weight:bold'> <span class=SpellE>XCalibur</span> software</span><span+
- lang=EN style='font-size:11.0pt;font-family:Arial;color:black;mso-ansi-language:+
- EN'><o:p></o:p></span></p>+
- </td>+
- </tr>+
- +
- <tr style='mso-yfti-irow:2'>+
- <td width=119 valign=top style='width:89.6pt;border:solid windowtext 1.0pt;+
- border-top:none;mso-border-top-alt:solid windowtext .5pt;mso-border-alt:solid windowtext .5pt;+
- padding:0in 5.4pt 0in 5.4pt'>+
- <p style='mso-element:frame;mso-element-frame-hspace:9.0pt;mso-element-wrap:+
- around;mso-element-anchor-vertical:paragraph;mso-element-anchor-horizontal:+
- column;mso-element-top:.05pt;mso-height-rule:exactly'><span lang=EN+
- style='font-size:11.0pt;font-family:Arial;color:black;mso-ansi-language:EN'>raw+
- dir<o:p></o:p></span></p>+
- </td>+
- <td width=240 valign=top style='width:2.5in;border-top:none;border-left:none;+
- border-bottom:solid windowtext 1.0pt;border-right:solid windowtext 1.0pt;+
- mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;+
- mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>+
- <p style='mso-element:frame;mso-element-frame-hspace:9.0pt;mso-element-wrap:+
- around;mso-element-anchor-vertical:paragraph;mso-element-anchor-horizontal:+
- column;mso-element-top:.05pt;mso-height-rule:exactly'><span lang=EN+
- style='font-size:11.0pt;font-family:Arial;color:navy;mso-ansi-language:EN'><a+
- href="http://sashimi.svn.sourceforge.net/viewvc/sashimi/tags/release_3-5-1/trans_proteomic_pipeline/src/mzXML/converters/massWolf/"><span+
- class=SpellE><span style='color:navy'>massWolf</span></span></a><o:p></o:p></span></p>+
- </td>+
- <td width=276 valign=top style='width:207.0pt;border-top:none;border-left:+
- none;border-bottom:solid windowtext 1.0pt;border-right:solid windowtext 1.0pt;+
- mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;+
- mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>+
- +
- <p style='background:white;mso-element:frame;mso-element-frame-hspace:9.0pt;+
- mso-element-wrap:around;mso-element-anchor-vertical:paragraph;mso-element-anchor-horizontal:+
- column;mso-element-top:.05pt;mso-height-rule:exactly'><span lang=EN+
- style='font-size:11.0pt;font-family:Arial;color:black;mso-ansi-language:EN'>Waters'+
- <span class=SpellE>MassLynx</span> software<b><o:p></o:p></b></span></p>+
- </td>+
- </tr>+
- <tr style='mso-yfti-irow:3'>+
- <td width=119 valign=top style='width:89.6pt;border:solid windowtext 1.0pt;+
- border-top:none;mso-border-top-alt:solid windowtext .5pt;mso-border-alt:solid windowtext .5pt;+
- padding:0in 5.4pt 0in 5.4pt'>+
- <p style='mso-element:frame;mso-element-frame-hspace:9.0pt;mso-element-wrap:+
- around;mso-element-anchor-vertical:paragraph;mso-element-anchor-horizontal:+
- column;mso-element-top:.05pt;mso-height-rule:exactly'><span lang=EN+
- style='font-size:11.0pt;font-family:Arial;color:black;mso-ansi-language:EN'>.<span+
- class=SpellE>Wiff</span> file<o:p></o:p></span></p>+
- +
- </td>+
- <td width=240 valign=top style='width:2.5in;border-top:none;border-left:none;+
- border-bottom:solid windowtext 1.0pt;border-right:solid windowtext 1.0pt;+
- mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;+
- mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>+
- <p style='mso-element:frame;mso-element-frame-hspace:9.0pt;mso-element-wrap:+
- around;mso-element-anchor-vertical:paragraph;mso-element-anchor-horizontal:+
- column;mso-element-top:.05pt;mso-height-rule:exactly'><span lang=EN+
- style='font-size:11.0pt;font-family:Arial;color:navy;mso-ansi-language:EN'><a+
- href="http://sourceforge.net/project/showfiles.php?group_id=69281&amp;package_id=265963"><span+
- class=SpellE><span style='color:navy'>mzWiff</span></span></a><o:p></o:p></span></p>+
- </td>+
- <td width=276 valign=top style='width:207.0pt;border-top:none;border-left:+
- none;border-bottom:solid windowtext 1.0pt;border-right:solid windowtext 1.0pt;+
- mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;+
- mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>+
- <p style='background:white;mso-element:frame;mso-element-frame-hspace:9.0pt;+
- mso-element-wrap:around;mso-element-anchor-vertical:paragraph;mso-element-anchor-horizontal:+
- column;mso-element-top:.05pt;mso-height-rule:exactly'><span lang=EN+
- style='font-size:11.0pt;font-family:Arial;color:black;mso-ansi-language:EN'>Analyst+
- software<o:p></o:p></span></p>+
- </td>+
- </tr>+
- +
- <tr style='mso-yfti-irow:4'>+
- <td width=119 valign=top style='width:89.6pt;border:solid windowtext 1.0pt;+
- border-top:none;mso-border-top-alt:solid windowtext .5pt;mso-border-alt:solid windowtext .5pt;+
- padding:0in 5.4pt 0in 5.4pt'>+
- <p style='mso-element:frame;mso-element-frame-hspace:9.0pt;mso-element-wrap:+
- around;mso-element-anchor-vertical:paragraph;mso-element-anchor-horizontal:+
- column;mso-element-top:.05pt;mso-height-rule:exactly'><span lang=EN+
- style='font-size:11.0pt;font-family:Arial;color:black;mso-ansi-language:EN'>.<span+
- class=SpellE>Wiff</span> file<o:p></o:p></span></p>+
- </td>+
- <td width=240 valign=top style='width:2.5in;border-top:none;border-left:none;+
- border-bottom:solid windowtext 1.0pt;border-right:solid windowtext 1.0pt;+
- mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;+
- mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>+
- <p style='mso-element:frame;mso-element-frame-hspace:9.0pt;mso-element-wrap:+
- around;mso-element-anchor-vertical:paragraph;mso-element-anchor-horizontal:+
- column;mso-element-top:.05pt;mso-height-rule:exactly'><span class=SpellE><span+
- lang=EN style='font-size:11.0pt;font-family:Arial;color:black;mso-ansi-language:+
- EN'>ML_Exporter</span></span><span lang=EN style='font-size:11.0pt;+
- font-family:Arial;color:black;mso-ansi-language:EN'><o:p></o:p></span></p>+
- +
- </td>+
- <td width=276 valign=top style='width:207.0pt;border-top:none;border-left:+
- none;border-bottom:solid windowtext 1.0pt;border-right:solid windowtext 1.0pt;+
- mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;+
- mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>+
- <p style='background:white;mso-element:frame;mso-element-frame-hspace:9.0pt;+
- mso-element-wrap:around;mso-element-anchor-vertical:paragraph;mso-element-anchor-horizontal:+
- column;mso-element-top:.05pt;mso-height-rule:exactly'><span lang=EN+
- style='font-size:11.0pt;font-family:Arial;color:black;mso-ansi-language:EN'><o:p>&nbsp;</o:p></span></p>+
- </td>+
- </tr>+
- <tr style='mso-yfti-irow:5;mso-yfti-lastrow:yes'>+
- <td width=119 valign=top style='width:89.6pt;border:solid windowtext 1.0pt;+
- border-top:none;mso-border-top-alt:solid windowtext .5pt;mso-border-alt:solid windowtext .5pt;+
- padding:0in 5.4pt 0in 5.4pt'>+
- <p style='mso-element:frame;mso-element-frame-hspace:9.0pt;mso-element-wrap:+
- around;mso-element-anchor-vertical:paragraph;mso-element-anchor-horizontal:+
- column;mso-element-top:.05pt;mso-height-rule:exactly'><span lang=EN+
- style='font-size:11.0pt;font-family:Arial;color:black;mso-ansi-language:EN'>.<span+
- class=SpellE>baf</span> file<o:p></o:p></span></p>+
- +
- </td>+
- <td width=240 valign=top style='width:2.5in;border-top:none;border-left:none;+
- border-bottom:solid windowtext 1.0pt;border-right:solid windowtext 1.0pt;+
- mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;+
- mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>+
- <p style='mso-element:frame;mso-element-frame-hspace:9.0pt;mso-element-wrap:+
- around;mso-element-anchor-vertical:paragraph;mso-element-anchor-horizontal:+
- column;mso-element-top:.05pt;mso-height-rule:exactly'><span class=SpellE><span+
- lang=EN style='font-size:11.0pt;font-family:Arial;color:black;mso-ansi-language:+
- EN'>CompassXport</span></span><span lang=EN style='font-size:11.0pt;+
- font-family:Arial;color:black;mso-ansi-language:EN'><o:p></o:p></span></p>+
- </td>+
- <td width=276 valign=top style='width:207.0pt;border-top:none;border-left:+
- none;border-bottom:solid windowtext 1.0pt;border-right:solid windowtext 1.0pt;+
- mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;+
- mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>+
- <p style='background:white;mso-element:frame;mso-element-frame-hspace:9.0pt;+
- mso-element-wrap:around;mso-element-anchor-vertical:paragraph;mso-element-anchor-horizontal:+
- column;mso-element-top:.05pt;mso-height-rule:exactly'><span class=SpellE><span+
- lang=EN style='font-size:11.0pt;font-family:Arial;color:black;mso-ansi-language:+
- EN'>CompassXport</span></span><span lang=EN style='font-size:11.0pt;+
- font-family:Arial;color:black;mso-ansi-language:EN'>, produced by <span+
- class=SpellE>Bruker</span><o:p></o:p></span></p>+
- </td>+
- +
- </tr>+
-</table>+
- +
-<p style='background:white'><span lang=EN style='font-size:11.0pt;font-family:+
-Arial;color:black;mso-ansi-language:EN'><br clear=all style='mso-special-character:+
-line-break'>+
-<o:p></o:p></span></p>+
- +
-<div style='mso-element:para-border-div;border:none;border-bottom:solid #AAAAAA 6.0pt;+
-padding:0in 0in 0in 0in;background:white'>+
- +
-<p class=MsoNormal style='mso-outline-level:3;background:white;border:none;+
-mso-border-bottom-alt:solid #AAAAAA 6.0pt;padding:0in;mso-padding-alt:0in 0in 0in 0in'><b+
-style='mso-bidi-font-weight:normal'><span lang=EN style='font-size:11.0pt;+
-font-family:Arial;color:black;mso-ansi-language:EN'>How to use it:<o:p></o:p></span></b></p>+
- +
-</div>+
- +
-<p style='margin:0in;margin-bottom:.0001pt;line-height:normal;background:white'><span+
-lang=EN style='font-size:11.0pt;font-family:Arial;color:black;mso-ansi-language:+
-EN'><o:p>&nbsp;</o:p></span></p>+
- +
-<div style='mso-element:para-border-div;border:none;border-bottom:solid #AAAAAA 6.0pt;+
-padding:0in 0in 0in 0in;background:white'>+
- +
-<p class=MsoNormal style='mso-outline-level:3;background:white;border:none;+
-mso-border-bottom-alt:solid #AAAAAA 6.0pt;padding:0in;mso-padding-alt:0in 0in 0in 0in'><span+
-lang=EN style='font-size:11.0pt;font-family:Arial;color:black;mso-ansi-language:+
-EN'>Suppose the remote window machine is named </span><span lang=EN+
-style='font-size:11.0pt;font-family:Arial;color:navy;mso-ansi-language:EN'>R+
-machine</span><span lang=EN style='font-size:11.0pt;font-family:Arial;+
-color:black;mso-ansi-language:EN'>. The local <span class=SpellE>linux</span>+
-machine is named </span><span lang=EN style='font-size:11.0pt;font-family:Arial;+
-color:navy;mso-ansi-language:EN'>L machine</span><span lang=EN+
-style='font-size:11.0pt;font-family:Arial;color:black;mso-ansi-language:EN'>.<b+
-style='mso-bidi-font-weight:normal'><o:p></o:p></b></span></p>+
- +
-<p class=MsoNormal style='margin-bottom:.1in;mso-outline-level:3;background:+
-white;border:none;mso-border-bottom-alt:solid #AAAAAA 6.0pt;padding:0in;+
-mso-padding-alt:0in 0in 0in 0in'><b style='mso-bidi-font-weight:normal'><i+
-style='mso-bidi-font-style:normal'><span lang=EN style='font-size:11.0pt;+
-font-family:Arial;color:navy;mso-ansi-language:EN'>On R machine:<o:p></o:p></span></i></b></p>+
- +
-<p class=MsoNormal style='margin-bottom:.1in;line-height:18.0pt;mso-outline-level:+
-3;background:white;border:none;mso-border-bottom-alt:solid #AAAAAA 6.0pt;+
-padding:0in;mso-padding-alt:0in 0in 0in 0in'><span class=SpellE><span+
-class=GramE><span lang=EN style='font-size:11.0pt;font-family:Arial;color:black;+
-mso-ansi-language:EN'>mkdir</span></span></span><span lang=EN style='font-size:+
-11.0pt;font-family:Arial;color:black;mso-ansi-language:EN'> C:\convert<o:p></o:p></span></p>+
- +
-<p class=MsoNormal style='margin-bottom:.1in;line-height:18.0pt;mso-outline-level:+
-3;background:white;border:none;mso-border-bottom-alt:solid #AAAAAA 6.0pt;+
-padding:0in;mso-padding-alt:0in 0in 0in 0in'><span lang=EN style='font-size:+
-11.0pt;font-family:Arial;color:black;mso-ansi-language:EN'>Download converter+
-executable and save into C:\convert<o:p></o:p></span></p>+
- +
-<p class=MsoNormal style='margin-bottom:.1in;line-height:18.0pt;mso-outline-level:+
-3;background:white;border:none;mso-border-bottom-alt:solid #AAAAAA 6.0pt;+
-padding:0in;mso-padding-alt:0in 0in 0in 0in'><span lang=EN style='font-size:+
-11.0pt;font-family:Arial;color:black;mso-ansi-language:EN'>Download+
-RemoteConvertServer.pl and lib dir, and save into C:\convert<o:p></o:p></span></p>+
- +
-<p class=MsoNormal style='margin-bottom:.1in;line-height:18.0pt;mso-outline-level:+
-3;background:white;border:none;mso-border-bottom-alt:solid #AAAAAA 6.0pt;+
-padding:0in;mso-padding-alt:0in 0in 0in 0in'><span lang=EN style='font-size:+
-11.0pt;font-family:Arial;color:black;mso-ansi-language:EN'>Download 7-zip,+
-unzip and save it into C:\convert\7-zip<o:p></o:p></span></p>+
- +
-<p class=MsoNormal style='margin-bottom:.1in;line-height:18.0pt;mso-outline-level:+
-3;background:white;border:none;mso-border-bottom-alt:solid #AAAAAA 6.0pt;+
-padding:0in;mso-padding-alt:0in 0in 0in 0in'><span class=SpellE><span+
-class=GramE><span lang=EN style='font-size:11.0pt;font-family:Arial;color:black;+
-mso-ansi-language:EN'>cd</span></span></span><span lang=EN style='font-size:+
-11.0pt;font-family:Arial;color:black;mso-ansi-language:EN'> C:\convert<o:p></o:p></span></p>+
- +
-<p class=MsoNormal style='margin-bottom:.1in;line-height:18.0pt;mso-outline-level:+
-3;background:white;border:none;mso-border-bottom-alt:solid #AAAAAA 6.0pt;+
-padding:0in;mso-padding-alt:0in 0in 0in 0in'><span class=SpellE><span+
-class=GramE><span lang=EN style='font-size:11.0pt;font-family:Arial;color:black;+
-mso-ansi-language:EN'>perl</span></span></span><span lang=EN style='font-size:+
-11.0pt;font-family:Arial;color:black;mso-ansi-language:EN'>+
- +
-RemoteConvertServer.pl <o:p></o:p></span></p>+
- +
-<p class=MsoNormal style='margin-bottom:.1in;line-height:18.0pt;mso-outline-level:+
-3;background:white;border:none;mso-border-bottom-alt:solid #AAAAAA 6.0pt;+
-padding:0in;mso-padding-alt:0in 0in 0in 0in'><b style='mso-bidi-font-weight:+
-normal'><i style='mso-bidi-font-style:normal'><span lang=EN style='font-size:+
-11.0pt;font-family:Arial;color:navy;mso-ansi-language:EN'>On L machine:<o:p></o:p></span></i></b></p>+
- +
-<p class=MsoNormal style='margin-bottom:.1in;line-height:18.0pt;mso-outline-level:+
-3;tab-stops:473.25pt;background:white;border:none;mso-border-bottom-alt:solid #AAAAAA 6.0pt;+
-padding:0in;mso-padding-alt:0in 0in 0in 0in'><span lang=EN style='font-size:+
-11.0pt;font-family:Arial;color:black;mso-ansi-language:EN'>Download+
-remoteconvert.pl and save into some dir.<span style='mso-tab-count:1'> </span><o:p></o:p></span></p>+
- +
-<p class=MsoNormal style='margin-bottom:.1in;line-height:18.0pt;mso-outline-level:+
-3;background:white;border:none;mso-border-bottom-alt:solid #AAAAAA 6.0pt;+
-padding:0in;mso-padding-alt:0in 0in 0in 0in'><span class=GramE><span lang=EN+
-style='font-size:11.0pt;font-family:Arial;color:black;mso-ansi-language:EN'>./</span></span><span+
-lang=EN style='font-size:11.0pt;font-family:Arial;color:black;mso-ansi-language:+
-EN'> remoteconvert.pl : show some examples command to run the software.<o:p></o:p></span></p>+
- +
-<p class=MsoNormal style='margin-bottom:.1in;line-height:18.0pt;mso-outline-level:+
-3;background:white;border:none;mso-border-bottom-alt:solid #AAAAAA 6.0pt;+
-padding:0in;mso-padding-alt:0in 0in 0in 0in'><span class=GramE><span lang=EN+
-style='font-size:11.0pt;font-family:Arial;color:black;mso-ansi-language:EN'>./</span></span><span+
-lang=EN style='font-size:11.0pt;font-family:Arial;color:black;mso-ansi-language:+
-EN'> remoteconvert.pl –<span class=SpellE>showoptions</span>: show all options+
-available for each converter<o:p></o:p></span></p>+
- +
-<p class=MsoNormal style='margin-bottom:.1in;line-height:18.0pt;mso-outline-level:+
-3;background:white;border:none;mso-border-bottom-alt:solid #AAAAAA 6.0pt;+
-padding:0in;mso-padding-alt:0in 0in 0in 0in'><span lang=EN style='font-size:+
-11.0pt;font-family:Arial;color:black;mso-ansi-language:EN'><o:p>&nbsp;</o:p></span></p>+
- +
-<p class=MsoNormal style='mso-outline-level:3;background:white;border:none;+
-mso-border-bottom-alt:solid #AAAAAA 6.0pt;padding:0in;mso-padding-alt:0in 0in 0in 0in'><b+
-style='mso-bidi-font-weight:normal'><span lang=EN style='font-size:11.0pt;+
-font-family:Arial;color:black;mso-ansi-language:EN'>Install <span class=SpellE>RemoteConvert</span>+
-as service:<o:p></o:p></span></b></p>+
- +
-</div>+
- +
-<p style='margin:0in;margin-bottom:.0001pt;line-height:normal;background:white'><span+
-lang=EN style='font-size:11.0pt;font-family:Arial;color:black;mso-ansi-language:+
-EN'><o:p>&nbsp;</o:p></span></p>+
- +
-<div style='mso-element:para-border-div;border:none;border-bottom:solid #AAAAAA 6.0pt;+
-padding:0in 0in 0in 0in;background:white'>+
- +
-<p class=MsoNormal style='margin-bottom:.1in;line-height:18.0pt;mso-outline-level:+
-3;background:white;border:none;mso-border-bottom-alt:solid #AAAAAA 6.0pt;+
-padding:0in;mso-padding-alt:0in 0in 0in 0in'><span lang=EN style='font-size:+
-11.0pt;font-family:Arial;color:black;mso-ansi-language:EN'>The service will+
-stop if the user session is time out or the window machine is restarted.<span+
-style='mso-spacerun:yes'> </span>I complied the <span class=SpellE>perl</span>+
- +
-code into a executable using <span class=SpellE>triall</span> version of perl2exe,+
-and installed it as service on a window 2000 and a window server 2003 <span+
-class=SpellE>sucessfully</span>, thus the service will keep running without+
-user log in and restart by itself after the computer restarts. <b+
-style='mso-bidi-font-weight:normal'><o:p></o:p></b></span></p>+
- +
-</div>+
- +
-<div style='mso-element:para-border-div;border:none;border-bottom:solid #AAAAAA 6.0pt;+
-padding:0in 0in 0in 0in;background:white;margin-left:9.0pt;margin-right:0in'>+
- +
-<p class=MsoNormal style='margin-bottom:.1in;line-height:18.0pt;mso-outline-level:+
-3;background:white;border:none;mso-border-bottom-alt:solid #AAAAAA 6.0pt;+
-padding:0in;mso-padding-alt:0in 0in 0in 0in'><b style='mso-bidi-font-weight:+
-normal'><span lang=EN style='font-size:11.0pt;font-family:Arial;color:black;+
-mso-ansi-language:EN'>Instructions on install user defined service:<o:p></o:p></span></b></p>+
- +
-</div>+
- +
-<p class=MsoNormal style='margin-left:9.0pt;line-height:150%;tab-stops:45.8pt 91.6pt 137.4pt 183.2pt 229.0pt 274.8pt 320.6pt 366.4pt 412.2pt 458.0pt 503.8pt 549.6pt 595.4pt 641.2pt 687.0pt 732.8pt;+
-background:white'><span lang=EN style='font-size:10.0pt;line-height:150%;+
-font-family:Arial;color:black;mso-ansi-language:EN'>Use perl2exe or other+
-software to convert the <span class=SpellE>perl</span> program (server side) to+
-<span class=SpellE>exectuable</span>. <o:p></o:p></span></p>+
- +
-<p class=MsoNormal style='line-height:150%;tab-stops:45.8pt 91.6pt 137.4pt 183.2pt 229.0pt 274.8pt 320.6pt 366.4pt 412.2pt 458.0pt 503.8pt 549.6pt 595.4pt 641.2pt 687.0pt 732.8pt;+
-background:white'><span lang=EN style='font-size:10.0pt;line-height:150%;+
-font-family:Arial;color:black;mso-ansi-language:EN'><span+
-style='mso-spacerun:yes'> </span>Suppose your <span class=SpellE>perl</span>+
-executable is located in C:\convert<o:p></o:p></span></p>+
- +
-<p class=MsoNormal style='margin-left:45.0pt;text-indent:-.25in;line-height:+
-150%;mso-list:l0 level2 lfo2;tab-stops:45.8pt 91.6pt 137.4pt 183.2pt 229.0pt 274.8pt 320.6pt 366.4pt 412.2pt 458.0pt 503.8pt 549.6pt 595.4pt 641.2pt 687.0pt 732.8pt;+
-background:white'><![if !supportLists]><span style='font-size:10.0pt;+
-line-height:150%;font-family:Arial;mso-fareast-font-family:Arial'><span+
-style='mso-list:Ignore'>1.<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;+
- +
-</span></span></span><![endif]><span style='font-size:10.0pt;line-height:150%;+
-font-family:Arial'>Download and install resource kit tool from Microsoft+
-website according to which version of window machine you have.<o:p></o:p></span></p>+
- +
-<p class=MsoNormal style='margin-left:45.0pt;line-height:150%;tab-stops:45.8pt 91.6pt 137.4pt 183.2pt 229.0pt 274.8pt 320.6pt 366.4pt 412.2pt 458.0pt 503.8pt 549.6pt 595.4pt 641.2pt 687.0pt 732.8pt;+
-background:white'><span style='font-size:10.0pt;line-height:150%;font-family:+
-Arial'>Window server 2003:<o:p></o:p></span></p>+
- +
-<p class=MsoNormal style='margin-left:27.0pt;line-height:150%;tab-stops:45.8pt 91.6pt 137.4pt 183.2pt 229.0pt 274.8pt 320.6pt 366.4pt 412.2pt 458.0pt 503.8pt 549.6pt 595.4pt 641.2pt 687.0pt 732.8pt;+
-background:white'><span style='font-size:10.0pt;line-height:150%;font-family:+
-Arial'><span style='mso-spacerun:yes'> </span><a+
-href="http://www.microsoft.com/downloads/details.aspx?FamilyID=9D467A69-57FF-4AE7-96EE-B18C4790CFFD&amp;displaylang=en">http://www.microsoft.com/downloads/details.aspx?FamilyID=9D467A69-57FF-4AE7-96EE-B18C4790CFFD&amp;displaylang=en</a><o:p></o:p></span></p>+
- +
-<p class=MsoNormal style='margin-left:27.0pt;line-height:150%;tab-stops:45.8pt 91.6pt 137.4pt 183.2pt 229.0pt 274.8pt 320.6pt 366.4pt 412.2pt 458.0pt 503.8pt 549.6pt 595.4pt 641.2pt 687.0pt 732.8pt;+
-background:white'><span style='font-size:10.0pt;line-height:150%;font-family:+
-Arial'><span style='mso-spacerun:yes'> </span>Window 2000:<o:p></o:p></span></p>+
- +
-<p class=MsoNormal style='margin-left:27.0pt;line-height:150%;tab-stops:45.8pt 91.6pt 137.4pt 183.2pt 229.0pt 274.8pt 320.6pt 366.4pt 412.2pt 458.0pt 503.8pt 549.6pt 595.4pt 641.2pt 687.0pt 732.8pt;+
-background:white'><span style='font-size:10.0pt;line-height:150%;font-family:+
-Arial'><span style='mso-spacerun:yes'> </span><a+
-href="http://www.microsoft.com/downloads/details.aspx?displaylang=en&amp;FamilyID=3e89879d-6c0b-4f92-96c4-1016c187d429">http://www.microsoft.com/downloads/details.aspx?displaylang=en&amp;FamilyID=3e89879d-6c0b-4f92-96c4-1016c187d429</a><o:p></o:p></span></p>+
- +
-<p class=MsoNormal style='margin-left:27.0pt;line-height:150%;tab-stops:45.8pt 91.6pt 137.4pt 183.2pt 229.0pt 274.8pt 320.6pt 366.4pt 412.2pt 458.0pt 503.8pt 549.6pt 595.4pt 641.2pt 687.0pt 732.8pt;+
-background:white'><span style='font-size:10.0pt;line-height:150%;font-family:+
-Arial'><span style='mso-spacerun:yes'> </span>Alternatively if you can get+
-INSTSRV.EXE and SRVANY.EXE somewhere, you don’t need to install the whole+
-resource kit.<o:p></o:p></span></p>+
- +
-<p class=MsoNormal style='margin-left:27.0pt;line-height:150%;tab-stops:45.8pt 91.6pt 137.4pt 183.2pt 229.0pt 274.8pt 320.6pt 366.4pt 412.2pt 458.0pt 503.8pt 549.6pt 595.4pt 641.2pt 687.0pt 732.8pt;+
-background:white'><span style='font-size:10.0pt;line-height:150%;font-family:+
-Arial'>Suppose these two executable is located in “C:\reskit”<o:p></o:p></span></p>+
- +
-<p class=MsoNormal style='margin-left:45.0pt;text-indent:-.25in;line-height:+
-150%;mso-list:l0 level2 lfo2;tab-stops:45.8pt 91.6pt 137.4pt 183.2pt 229.0pt 274.8pt 320.6pt 366.4pt 412.2pt 458.0pt 503.8pt 549.6pt 595.4pt 641.2pt 687.0pt 732.8pt;+
-background:white'><![if !supportLists]><span lang=EN style='font-size:10.0pt;+
-line-height:150%;font-family:Arial;mso-fareast-font-family:Arial;color:black;+
-mso-ansi-language:EN'><span style='mso-list:Ignore'>2.<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;+
-</span></span></span><![endif]><span style='font-size:10.0pt;line-height:150%;+
-font-family:Arial'>At a MS-DOS command prompt(running CMD.EXE), type the+
-following command:<br>+
-<i>C:\reskit</i>\INSTSRV.EXE <span class=SpellE><i>RemoteConvert</i></span><i> </i>C:\reskit\SRVANY.EXE</span><span+
-lang=EN style='font-size:10.0pt;line-height:150%;font-family:Arial;color:black;+
-mso-ansi-language:EN'><o:p></o:p></span></p>+
- +
-<p class=MsoNormal style='margin-left:45.0pt;text-indent:-.25in;line-height:+
-150%;mso-list:l0 level2 lfo2;tab-stops:45.8pt 91.6pt 137.4pt 183.2pt 229.0pt 274.8pt 320.6pt 366.4pt 412.2pt 458.0pt 503.8pt 549.6pt 595.4pt 641.2pt 687.0pt 732.8pt;+
-background:white'><![if !supportLists]><span lang=EN style='font-size:10.0pt;+
-line-height:150%;font-family:Arial;mso-fareast-font-family:Arial;color:black;+
-mso-ansi-language:EN'><span style='mso-list:Ignore'>3.<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;+
-</span></span></span><![endif]><span style='font-size:10.0pt;line-height:150%;+
-font-family:Arial'>Run Registry Editor (<span class=SpellE><b>start|run|regedit</b></span><b>)+
-</b>and locate the following <span class=SpellE>subkey</span>:<br>+
-<span style='mso-spacerun:yes'> +
-</span>HKEY_LOCAL_MACHINE\SYSTEM\CurrentControlSet\Services\RemoteConvert </span><span+
-lang=EN style='font-size:10.0pt;line-height:150%;font-family:Arial;color:black;+
-mso-ansi-language:EN'><o:p></o:p></span></p>+
- +
-<p class=MsoNormal style='line-height:150%;tab-stops:45.8pt 91.6pt 137.4pt 183.2pt 229.0pt 274.8pt 320.6pt 366.4pt 412.2pt 458.0pt 503.8pt 549.6pt 595.4pt 641.2pt 687.0pt 732.8pt;+
-background:white'><span lang=EN style='font-size:10.0pt;line-height:150%;+
-font-family:Arial;color:black;mso-ansi-language:EN'><span+
-style='mso-spacerun:yes'> </span><span+
-style='mso-spacerun:yes'> </span>a.</span><span style='font-size:10.0pt;+
-line-height:150%;font-family:Arial'> From the Edit menu, click New Key. Type+
-the following and click OK:<br>+
- +
-<span style='mso-spacerun:yes'> </span>Key Name: Parameters<br>+
-<span style='mso-spacerun:yes'> </span>Class : &lt;leave+
-blank&gt; </span><span lang=EN style='font-size:10.0pt;line-height:150%;+
-font-family:Arial;color:black;mso-ansi-language:EN'><o:p></o:p></span></p>+
- +
-<p class=MsoNormal style='margin-left:22.5pt;line-height:150%'><span+
-style='font-size:10.0pt;line-height:150%;font-family:Arial'><span+
-style='mso-spacerun:yes'> </span>b. Select the Parameters key. <o:p></o:p></span></p>+
- +
-<p class=MsoNormal style='line-height:150%'><span style='font-size:10.0pt;+
-line-height:150%;font-family:Arial'><span+
-style='mso-spacerun:yes'> </span>From the Edit menu, click New+
-Value. Type the following and click OK:<br>+
-<span style='mso-spacerun:yes'> </span>Value Name: Application<br>+
- +
-<span style='mso-spacerun:yes'> </span>Data Type: REG_SZ<br>+
-<span style='mso-spacerun:yes'> </span>String:+
-C:\convert\RemoteConvertServer.exe<o:p></o:p></span></p>+
- +
-<p class=MsoNormal style='margin-left:22.5pt;line-height:150%'><span+
-style='font-size:10.0pt;line-height:150%;font-family:Arial'><span+
-style='mso-spacerun:yes'> </span>b. Select the Parameters key<o:p></o:p></span></p>+
- +
-<p class=MsoNormal style='margin-left:22.5pt;line-height:150%'><span+
-style='font-size:10.0pt;line-height:150%;font-family:Arial'><span+
-style='mso-spacerun:yes'> </span>From the Edit menu, click New Value.+
-Type the following and click OK:<br>+
-<span style='mso-spacerun:yes'> </span>Value Name: <span class=SpellE>AppDirectory</span><br>+
- +
-<span style='mso-spacerun:yes'> </span>Data Type: REG_SZ<br>+
-<span style='mso-spacerun:yes'> </span>String: C:\convert<o:p></o:p></span></p>+
- +
-<p class=MsoNormal style='margin-left:.5in;line-height:150%'><span+
-style='font-size:10.0pt;line-height:150%;font-family:Arial'><span+
-style='mso-spacerun:yes'> </span>d. Close Registry Editor.<br>+
-4: start the service<br>+
-<span style='mso-spacerun:yes'> </span>control panel -&gt; administrative tool+
--&gt; component service<o:p></o:p></span></p>+
- +
-<div style='mso-element:para-border-div;border:none;border-bottom:solid #AAAAAA 6.0pt;+
-padding:0in 0in 2.0pt 0in;background:white'>+
- +
-<p class=MsoNormal style='margin-bottom:.1in;line-height:18.0pt;mso-outline-level:+
-3;background:white;border:none;mso-border-bottom-alt:solid #AAAAAA 6.0pt;+
-padding:0in;mso-padding-alt:0in 0in 2.0pt 0in'><span style='font-size:10.0pt;+
-font-family:Arial'>&nbsp;&nbsp;<span style='mso-spacerun:yes'> +
-</span>Find the &quot;<span class=SpellE>RemoteConvert</span>&quot; <br>+
-&nbsp;&nbsp;<span style='mso-spacerun:yes'> </span>Click it<br>+
-&nbsp;&nbsp;<span style='mso-spacerun:yes'> </span>on popup window,+
-click start<br style='mso-special-character:line-break'>+
-<![if !supportLineBreakNewLine]><br style='mso-special-character:line-break'>+
-<![endif]><o:p></o:p></span></p>+
- +
-<p class=MsoNormal style='margin-bottom:.1in;line-height:18.0pt;mso-outline-level:+
-3;background:white;border:none;mso-border-bottom-alt:solid #AAAAAA 6.0pt;+
-padding:0in;mso-padding-alt:0in 0in 2.0pt 0in'><b style='mso-bidi-font-weight:+
-normal'><span lang=EN style='font-size:11.0pt;font-family:Arial;color:black;+
-mso-ansi-language:EN'>Getting the software:<o:p></o:p></span></b></p>+
- +
-</div>+
- +
-<p style='background:white'><b><span lang=EN style='font-size:11.0pt;+
-font-family:Arial;color:black;mso-ansi-language:EN'>This software is included+
-in the current <a+
-href="http://tools.proteomecenter.org/wiki/index.php?title=Software:TPP"+
-title="Software:TPP"><span style='color:black'>TPP</span></a> distribution.</span></b><span+
-lang=EN style='font-size:11.0pt;font-family:Arial;color:black;mso-ansi-language:+
-EN'> <o:p></o:p></span></p>+
- +
-<p style='background:white'><span lang=EN style='font-size:11.0pt;font-family:+
-Arial;color:black;mso-ansi-language:EN'>Additional methods for obtaining the+
-software are: <o:p></o:p></span></p>+
- +
-<p class=MsoNormal style='mso-margin-top-alt:auto;margin-bottom:1.2pt;+
-margin-left:.25in;text-indent:-.25in;line-height:18.0pt;mso-list:l0 level1 lfo2;+
-tab-stops:list .5in;background:white'><![if !supportLists]><span lang=EN+
-style='font-size:10.0pt;mso-bidi-font-size:11.0pt;font-family:Wingdings;+
-mso-fareast-font-family:Wingdings;mso-bidi-font-family:Wingdings;color:black;+
-mso-ansi-language:EN'><span style='mso-list:Ignore'><img width=12 height=12+
-src=PicExportError alt="*"><span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;+
-</span></span></span><![endif]><span lang=EN style='font-size:11.0pt;+
-font-family:Arial;color:black;mso-ansi-language:EN'>Download from <span+
-class=SpellE>SourceForge</span> Sashimi project file release: [1] <o:p></o:p></span></p>+
- +
-<p class=MsoNormal style='mso-margin-top-alt:auto;margin-bottom:1.2pt;+
-margin-left:.25in;text-indent:-.25in;line-height:18.0pt;mso-list:l0 level1 lfo2;+
-tab-stops:list .5in;background:white'><![if !supportLists]><span lang=EN+
-style='font-size:10.0pt;mso-bidi-font-size:11.0pt;font-family:Wingdings;+
-mso-fareast-font-family:Wingdings;mso-bidi-font-family:Wingdings;color:black;+
-mso-ansi-language:EN'><span style='mso-list:Ignore'><img width=12 height=12+
-src=PicExportError alt="*"><span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;+
-</span></span></span><![endif]><span lang=EN style='font-size:11.0pt;+
-font-family:Arial;color:black;mso-ansi-language:EN'>Browse <span class=SpellE>sourcecode</span>+
-from on Sashimi project <span class=GramE>SVN[</span>2]. <o:p></o:p></span></p>+
- +
-<p class=MsoNormal style='line-height:18.0pt;background:white'><a+
-name=Troubleshooting></a><span lang=EN style='font-size:11.0pt;font-family:+
-Arial;color:black;mso-ansi-language:EN'><o:p>&nbsp;</o:p></span></p>+
- +
-<p class=MsoNormal style='line-height:150%;tab-stops:45.8pt 91.6pt 137.4pt 183.2pt 229.0pt 274.8pt 320.6pt 366.4pt 412.2pt 458.0pt 503.8pt 549.6pt 595.4pt 641.2pt 687.0pt 732.8pt;+
-background:white'><span style='font-size:10.0pt;line-height:150%;font-family:+
-Arial'>&nbsp;<o:p></o:p></span></p>+
- +
-<p class=MsoNormal style='line-height:150%;tab-stops:45.8pt 91.6pt 137.4pt 183.2pt 229.0pt 274.8pt 320.6pt 366.4pt 412.2pt 458.0pt 503.8pt 549.6pt 595.4pt 641.2pt 687.0pt 732.8pt;+
-background:white'><span lang=EN style='font-size:10.0pt;line-height:150%;+
-font-family:Arial;color:black;display:none;mso-hide:all;mso-ansi-language:EN'>Retrieved+
-from &quot;<a+
-href="http://tools.proteomecenter.org/wiki/index.php?title=Software:ReAdW">http://tools.proteomecenter.org/wiki/index.php?title=Software:ReAdW</a>&quot;<o:p></o:p></span></p>+
- +
-<!-- end content -->+
- +
-<p class=MsoNormal style='line-height:150%;tab-stops:45.8pt 91.6pt 137.4pt 183.2pt 229.0pt 274.8pt 320.6pt 366.4pt 412.2pt 458.0pt 503.8pt 549.6pt 595.4pt 641.2pt 687.0pt 732.8pt'><span+
-style='font-size:10.0pt;line-height:150%;font-family:Arial'><o:p>&nbsp;</o:p></span></p>+
- +
-</div>+
- +
-</body>+
- +
-</html>+

Revision as of 17:28, 4 March 2009

Software: RemoteConvert Convert the raw file remotely.

Description Because several conversion programs depend on Windows-only vendor libraries from different manufacture, this software will enable you converting your raw files in you local machine without logging in to remote window machine.

Requirements The following is a list of software need to be installed in window machine before you can convert each type of the raw file. Raw file type Raw-to-mzXML/mzML converter Software .RAW file ReAdw Thermo's XCalibur software raw dir massWolf Waters' MassLynx software .Wiff file mzWiff Analyst software .Wiff file ML_Exporter .baf file CompassXport CompassXport, produced by Bruker


How to use it:

Suppose the remote window machine is named R machine. The local linux machine is named L machine. On R machine: mkdir C:\convert Download converter executable and save into C:\convert Download RemoteConvertServer.pl and lib dir, and save into C:\convert Download 7-zip, unzip and save it into C:\convert\7-zip cd C:\convert perl RemoteConvertServer.pl On L machine: Download remoteconvert.pl and save into some dir. ./ remoteconvert.pl : show some examples command to run the software. ./ remoteconvert.pl –showoptions: show all options available for each converter

Install RemoteConvert as service:

The service will stop if the user session is time out or the window machine is restarted. I complied the perl code into a executable using triall version of perl2exe, and installed it as service on a window 2000 and a window server 2003 sucessfully, thus the service will keep running without user log in and restart by itself after the computer restarts. Instructions on install user defined service: Use perl2exe or other software to convert the perl program (server side) to exectuable. 

        Suppose your perl executable is located in C:\convert

1. Download and install resource kit tool from Microsoft website according to which version of window machine you have. Window server 2003: 

    http://www.microsoft.com/downloads/details.aspx?FamilyID=9D467A69-57FF-4AE7-96EE-B18C4790CFFD&displaylang=en
    Window 2000:
    http://www.microsoft.com/downloads/details.aspx?displaylang=en&FamilyID=3e89879d-6c0b-4f92-96c4-1016c187d429
    Alternatively if you can get INSTSRV.EXE and SRVANY.EXE somewhere, you don’t need to install the whole resource kit.

Suppose these two executable is located in “C:\reskit” 2. At a MS-DOS command prompt(running CMD.EXE), type the following command: C:\reskit\INSTSRV.EXE RemoteConvert C:\reskit\SRVANY.EXE 3. Run Registry Editor (start|run|regedit) and locate the following subkey: 

  HKEY_LOCAL_MACHINE\SYSTEM\CurrentControlSet\Services\RemoteConvert 
                a. From the Edit menu, click New Key. Type the following and click OK:
                Key Name: Parameters
                Class : <leave blank> 
         b. Select the Parameters key. 
                 From the Edit menu, click New Value. Type the following and click OK:
                 Value Name: Application
                 Data Type: REG_SZ
                 String: C:\convert\RemoteConvertServer.exe
        b. Select the Parameters key
        From the Edit menu, click New Value. Type the following and click OK:
        Value Name: AppDirectory
        Data Type: REG_SZ
        String: C:\convert
    d. Close Registry Editor.

4: start the service 

control panel -> administrative tool -> component service
            Find the "RemoteConvert" 
            Click it
            on popup window, click start

Getting the software: This software is included in the current TPP distribution. Additional methods for obtaining the software are: 

	Download from SourceForge Sashimi project file release: [1] 
	Browse sourcecode from on Sashimi project SVN[2].
Retrieved from "http://tools.proteomecenter.org/wiki/index.php?title=Software:RemoteConvert"
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