Software:TPP-MaRiMba
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| ==Downloading the software== | ==Downloading the software== | ||
| - | The software can be found here: http://tools.proteomecenter.org/software/MaRiMba/TPP_Setup_v4_1_MaRiMba_rev_0.exe | + | The software will be available for public download from this site after publication of the manuscript (currently under review). |
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| - | Additional methods for obtaining the software are: | + | |
| - | *Browse sourcecode repository from the Sashimi project [http://sashimi.svn.sourceforge.net/viewvc/sashimi/branches/kelp/trans_proteomic_pipeline SVN]. | + | |
| ==Troubleshooting== | ==Troubleshooting== | ||
Revision as of 17:31, 27 January 2009
TPP-MaRiMba: MRM-aware SpectraST Pipeline
Contents |
Description
MaRiMba is used to automate the creation of explicitly defined transition lists required for multiple reaction monitoring (MRM) experiments. MaRiMba creates MRM transition lists from pre-existing or custom spectral libraries, restricts output to specified proteins or peptides of interest, and filters MRM lists based on user-defined precursor peptide and product ion properties. MaRiMba can also create MRM lists containing corresponding transitions for isotopically heavy peptides, for which the precursor and product ions are adjusted according to user specifications. MaRiMba outputs the final MRM list to a text file ready for upload to a mass spectrometer.
Current Version
The current version of TPP-MaRiMba is 4.1.0. This number reflects the main TPP version number, from which TPP-MaRiMba is branched. TPP-MaRiMba was last released December 2008
Requirments
Windows XP, Service Pack 2 or above. For instrument-to-mzXML conversion, you will need the corresponding vendor software on the same system. See Formats:mzXML for more information.
Downloading the software
The software will be available for public download from this site after publication of the manuscript (currently under review).
