Software:Prequips
From SPCTools
| Revision as of 00:53, 20 June 2006 Gehlenbo (Talk | contribs) (Initial creation of the page.) ← Previous diff |
Revision as of 22:56, 20 June 2006 Gehlenbo (Talk | contribs) (Link to FAQ.) Next diff → |
||
| Line 6: | Line 6: | ||
| * Reads mzXML, pepXML and protXML (if corresponding plug-ins are installed). | * Reads mzXML, pepXML and protXML (if corresponding plug-ins are installed). | ||
| * Interacts with other applications such as Cytoscape through the Gaggle. | * Interacts with other applications such as Cytoscape through the Gaggle. | ||
| - | |||
| Note that "feature" in Eclipse slang refers to a set of plug-ins that implement a certain functionality of the software. | Note that "feature" in Eclipse slang refers to a set of plug-ins that implement a certain functionality of the software. | ||
| + | == Using Prequips == | ||
| - | == How to Get Started == | + | Go to \\isb-2\public\ngehlenb and select the *.zip file with the highest release number. Consult the [[Prequips:FAQ|FAQ]] to find out how to use individual features. A manual doesn't exisit at the moment. |
| - | === Users === | + | == Developing Prequips === |
| - | + | ||
| - | Go to \\isb-2\public\ngehlenb and select the *.zip file with the highest release number. | + | |
| - | + | ||
| - | === Developers === | + | |
| To modify the Prequips core application or to develop Prequips extensions an Eclipse installation is required. Refer to the notes on [[Prequips:Eclipse_Setup|how to setup Eclipse]] to find out which Eclipse features are required and on how to check out Prequips from the Subversion repository. | To modify the Prequips core application or to develop Prequips extensions an Eclipse installation is required. Refer to the notes on [[Prequips:Eclipse_Setup|how to setup Eclipse]] to find out which Eclipse features are required and on how to check out Prequips from the Subversion repository. | ||
| - | |||
| == Updating a Prequips Installation == | == Updating a Prequips Installation == | ||
| - | Prequips uses the same update mechanisms as the Eclipse RCP that it is based on. To search for new extensions to the software go to '''Help > Search for Extensions'''. This will automatically contact the local update site (not accessible from outside the Institute for Systems Biology) and search for features that | + | Prequips uses the same update mechanisms as the Eclipse RCP that it is based on. To search for new extensions to the software go to '''Help > Search for Extensions'''. This will automatically contact the local update site (not accessible from outside the Institute for Systems Biology) and search for features that can be used with your version of Prequips. |
| - | + | ||
| == Screenshot Gallery == | == Screenshot Gallery == | ||
| Line 32: | Line 26: | ||
| image:example.jpg|File upload is currently disabled. | image:example.jpg|File upload is currently disabled. | ||
| </gallery> | </gallery> | ||
| + | |||
| + | == More == | ||
| + | # [[Prequips:FAQ|FAQ]] is the recommened source of information for users. | ||
Revision as of 22:56, 20 June 2006
Prequips is an application for integration and exploration of proteomics mass spectrometry data. It handles both MS level 1 and MS level 2 data.
Contents |
Key Features
- Interactive, graphical user interface.
- Reads mzXML, pepXML and protXML (if corresponding plug-ins are installed).
- Interacts with other applications such as Cytoscape through the Gaggle.
Note that "feature" in Eclipse slang refers to a set of plug-ins that implement a certain functionality of the software.
Using Prequips
Go to \\isb-2\public\ngehlenb and select the *.zip file with the highest release number. Consult the FAQ to find out how to use individual features. A manual doesn't exisit at the moment.
Developing Prequips =
To modify the Prequips core application or to develop Prequips extensions an Eclipse installation is required. Refer to the notes on how to setup Eclipse to find out which Eclipse features are required and on how to check out Prequips from the Subversion repository.
Updating a Prequips Installation
Prequips uses the same update mechanisms as the Eclipse RCP that it is based on. To search for new extensions to the software go to Help > Search for Extensions. This will automatically contact the local update site (not accessible from outside the Institute for Systems Biology) and search for features that can be used with your version of Prequips.
Screenshot Gallery
 File upload is currently disabled. |
More
- FAQ is the recommened source of information for users.
