Software:SWATHProphet

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	''Automated Validation of Results and Removal of Fragment Ion Interferences in Targeted Analysis of Data Independent Acquisition MS using SWATHProphet''		''Automated Validation of Results and Removal of Fragment Ion Interferences in Targeted Analysis of Data Independent Acquisition MS using SWATHProphet''
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	'''Molecular and Cellular Proteomics 2015''', in press.		'''Molecular and Cellular Proteomics 2015''', in press.

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Revision as of 23:32, 23 February 2015

Contents 1 Overview 2 Manuscript 3 Obtaining the software 4 Running the software 5 Author

Overview

SWATH Prophet is a software tool for the analysis of SWATH (DIA) data.

Manuscript

Automated Validation of Results and Removal of Fragment Ion Interferences in Targeted Analysis of Data Independent Acquisition MS using SWATHProphet

Molecular and Cellular Proteomics 2015, in press.

Obtaining the software

 Via SVN:
         - website: https://sourceforge.net/p/sashimi/code/HEAD/tree/trunk/SWATHProphet/
         - export: svn export https://svn.code.sf.net/p/sashimi/code/trunk/SWATHProphet SWATHProphet

 Via HTTP:
         - https://sourceforge.net/projects/sashimi/files/SWATHProphet/

Running the software

There is a tutorial checked into the codebase, which can be obtained as outlined above. The tutorial can also be downloaded directlyhere .

The dataset used in the example can be downloaded from SWATH Atlas here

Author

Andy Keller