TPP:Supported Search Engines
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| Revision as of 21:44, 15 October 2014 Dshteynb (Talk | contribs) (→supported search engines) ← Previous diff |
Current revision Dshteynb (Talk | contribs) (→supported search engines) |
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| ===Inspect=== | ===Inspect=== | ||
| [http://proteomics.ucsd.edu/software-tools/inspectms-alignment/ Inspect] | [http://proteomics.ucsd.edu/software-tools/inspectms-alignment/ Inspect] | ||
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| + | ===OMSSA=== | ||
| + | [http://www.ncbi.nlm.nih.gov/Web/Newsltr/V14N2/index.html OMSSA] | ||
| ===MyriMatch=== | ===MyriMatch=== | ||
Current revision
Contents |
what is a search engine?
In this context, a "search engine" is a tool that attempts to assign a peptide sequence to a MS/MS (or MS2) spectra.
supported search engines
The TPP now officially works with these search engines:
COMET
COMET open-source database search engine provided with TPP (as of version 4.7.1)
X!Tandem
X!Tandem is a open-source, free search engine. X!Tandem with the K-Score plugin is now distributed as part of the Windows TPP (as of version 3.2.1).
SEQUEST
SEQUEST is a commercial search engine, currently sold by Thermo.
MSGF+
Inspect
OMSSA
MyriMatch
MyriMatch open-source tandem mass spectral peptide identification by multivariate hypergeometric analysis
ProbID
ProbIDis an open-source, freely-available SPC developed search engine.
Mascot
Mascot is a commercial search engine, distributed by Matrix Science.
Phenyx
Phenyx is a commercial search engine.
