TPP:4.4.1 Release Notes
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| * Included msconvert dll/utility files missing in 4.4.0 | * Included msconvert dll/utility files missing in 4.4.0 | ||
| + | * Fix option parsing bug in PeptideProphet parser | ||
| - | ------------------------------------------------------------------------ | + | * XCheck added to XpressPeptideParasthe initialization function to avoid possible negative |
| - | r5197 | dshteyn | 2010-10-12 10:32:05 -0700 (Tue, 12 Oct 2010) | 1 line | + | * Issue readIndex call once and use for both ms/ms and ms1 plots in Comet viewer |
| - | Backing out system specific checkin that shouldn't've been, retaining the CLEVEL stuff | + | |
| - | ------------------------------------------------------------------------ | + | * Fix error of an array not being initialized (line 2910) presumably introduced in last bugfix checkin. Effect was a bunch of peptides |
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| - | r5195 | dshteyn | 2010-10-11 17:28:27 -0700 (Mon, 11 Oct 2010) | 1 lin | + | |
| - | Petunia: Add feature for setting CLEVEL parameter on Analyze Peptides page | + | |
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| - | ------------------------------------------------------------------------ | + | |
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| - | r5194 | dshteyn | 2010-10-11 17:25:24 -0700 (Mon, 11 Oct 2010) | 1 line | + | |
| - | Fix option parsing bug | + | |
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| - | ------------------------------------------------------------------------ | + | |
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| - | ------------------------------------------------------------------------ | + | |
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| - | r5176 | eng_jk | 2010-09-20 16:03:20 -0700 (Mon, 20 Sep 2010) | 2 lines | + | |
| - | add check to the initialization function to avoid possible negative index value | + | |
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| - | ------------------------------------------------------------------------ | + | |
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| - | r5160 | eng_jk | 2010-09-10 15:35:12 -0700 (Fri, 10 Sep 2010) | 2 lines | + | |
| - | issue readIndex call once and use for both ms/ms and ms1 plots | + | |
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| - | ------------------------------------------------------------------------ | + | |
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| - | r5158 | eng_jk | 2010-09-10 12:09:13 -0700 (Fri, 10 Sep 2010) | 5 lines | + | |
| - | + | ||
| - | Fix error of an array not being initialized (line 2910) presumably | + | |
| - | introduced in last bugfix checkin. Effect was a bunch of peptides | + | |
| not being quantified; surprised it even produced results at all. | not being quantified; surprised it even produced results at all. | ||
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| - | ------------------------------------------------------------------------ | ||
| == Known Issues == | == Known Issues == | ||
Revision as of 23:02, 29 October 2010
Trans-Proteomic Pipeline (TPP) "Vuvuzela" 4.4.1 release notes
Trans-Proteomic Pipeline (TPP) software, release 4.4.1 is a maintenance release which addresses a number of issues that have been recently found. The software is available for Windows as well as linux (and unofficially) through OSX source from all the usual locations (please see the section below, "Getting the software"). Most users are recommended to use the Windows installer, which installs and configures the TPP and other required software (such as a webserver). For advanced users who need to customize the TPP, or for those who run high-throughput experiments, you can download the source code. Again, most users don't need build from source, and should use the Windows installer.
Contents |
New Features/Changes
- Perl check now presents a "abort/retry/ignore" dialog if the perl check fails -- allowing users to continue the installation in the event this a failed perl check...fails
Bug fixes and improvements
- Fixes to installer to recognize versions of perl
- Included msconvert dll/utility files missing in 4.4.0
- Fix option parsing bug in PeptideProphet parser
- XCheck added to XpressPeptideParasthe initialization function to avoid possible negative
- Issue readIndex call once and use for both ms/ms and ms1 plots in Comet viewer
- Fix error of an array not being initialized (line 2910) presumably introduced in last bugfix checkin. Effect was a bunch of peptides
not being quantified; surprised it even produced results at all.
Known Issues
- None to report
Getting the TPP Software
- Download the TPP version 4.4.1 native windows installer (TPP_Setup_v4_4_VUVUZELA_rev_1.exe) from the Sashimi SourceForge project file release page:
"http://sourceforge.net/projects/sashimi/files/"
- Everyone is encouraged to read and contribute to our wiki, at
"http://tools.proteomecenter.org/wiki/"
- For guides to installing and using our software, please see our wiki:
"http://tools.proteomecenter.org/wiki/index.php?title=Software:TPP"
- For downloading the source code, please go to the following link:
"http://sourceforge.net/projects/sashimi/files/" and find the 4.4.1 source code .zip package;
or, check out the code directly from svn:
"svn co http://sashimi.svn.sourceforge.net/svnroot/sashimi/tags/release_4-4-1"
For building from source, please refer to the readme file in TPP/src as well as the wiki.
The TPP Team: Luis, David, Brian, Natalie, and Joe plus all other developers who contributed to this release from the ISB. Thanks to developers and users from the TPP's user community who provided feedback and code contributions.
