Software:msBID
From SPCTools
(Difference between revisions)
| Revision as of 23:24, 16 April 2008 Nzhang (Talk | contribs) ← Previous diff |
Revision as of 19:17, 17 April 2008 Nzhang (Talk | contribs) Next diff → |
||
| Line 4: | Line 4: | ||
| ==Description== | ==Description== | ||
| - | msBID is a java package designated for label-free LC-MS based comparative proteomic analysis. | + | msBID is a java package designated for label-free LC-MS based comparative proteomic analysis. There are four modules in the package. *Detection of peptide features from MS1.*Map identified peptides from MS2 to the features detected from MS1.*Alignment of peptide features from multiple LC-MS experiments.*Normalize the feature intensities due to systematic variations. *The output from msBID can be readily analyzed by BAMarray [http://ora.ra.cwru.edu/bamarray] for selecting the differentially expressed peptides. |
| + | |||
| + | == | ||
Revision as of 19:17, 17 April 2008
Getting the software
- Please download version 1 of this software for LINUX here
- Please download version 1 of this software for Windows here
Description
msBID is a java package designated for label-free LC-MS based comparative proteomic analysis. There are four modules in the package. *Detection of peptide features from MS1.*Map identified peptides from MS2 to the features detected from MS1.*Alignment of peptide features from multiple LC-MS experiments.*Normalize the feature intensities due to systematic variations. *The output from msBID can be readily analyzed by BAMarray [1] for selecting the differentially expressed peptides.
==
