TPP:V5Feedback

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This page here is to record feedback/issues found with the development builds of 5.0.0 This page here is to record feedback/issues found with the development builds of 5.0.0
-==== Release 5.0.0a2 ==== +==== Release 5.0.0a2 ====
 + 
 +* Uninstall leaves cmd.exe, and data/ log/ users/ dirs. (by design?)
 +** Joe: Yes. Well at least data/, log/. Don't think you'd want to remove TPP and lose all your data. The users/ directory could get removed, and I guess the log directory if you guys think so. The cmd.exe file, is that in bin? If so it should have been removed.
 +* ERROR in Petunia. CGI::multi_param is not a valid subroutine (new version of CGI.pm)
 +** This again?!?! So if you use ActivePerl you'll need to update CGI, I sent along instructions in a email to Luis. Otherwise yes, there still are places where parm() is called in a array context and needs to be replaced with multi_param(). I did another pass looking for these occurrences, but there are many. Someone other than me should do a grep 'param(' and check them out.
 +* <s>Adjust web timeout!?? Seemed to have pooped at 2 minutes...? Done</s>
 +* PepXMLViewer: BAD link to SpectraST ("ST")
 +* Petunia icon on desktop and all pages!
 +** Window's quirk? Sometimes I see this sometimes I don't. The code in the installer looks solid.
 +* tpp_models: bad links to js/ resources ("/ISB/html...")
 +** missing jquery.flot.errorbars.js
 +* ProtXMLViewer fails...(bad gateway)
 +* Old ProtXMLViewer fails too: system cannot find the path specified
 +* updatepaths does not seem to do anything, no output, even with -vv
 +* mzIdent conversion fails
 +* Petunia::Issue when selecting a directory from quick-select drop-down
 +* decoyFastaGenerator.pl does not launch from Petunia
 +* Downloading Spectral Libs fails, yet again: bad paths to md5sum, wget, and unzip
==== Release 5.0.0a1 ==== ==== Release 5.0.0a1 ====

Revision as of 19:26, 17 July 2015

Feedback related to releasing TPP version 5.0

This page here is to record feedback/issues found with the development builds of 5.0.0

Release 5.0.0a2

  • Uninstall leaves cmd.exe, and data/ log/ users/ dirs. (by design?)
    • Joe: Yes. Well at least data/, log/. Don't think you'd want to remove TPP and lose all your data. The users/ directory could get removed, and I guess the log directory if you guys think so. The cmd.exe file, is that in bin? If so it should have been removed.
  • ERROR in Petunia. CGI::multi_param is not a valid subroutine (new version of CGI.pm)
    • This again?!?! So if you use ActivePerl you'll need to update CGI, I sent along instructions in a email to Luis. Otherwise yes, there still are places where parm() is called in a array context and needs to be replaced with multi_param(). I did another pass looking for these occurrences, but there are many. Someone other than me should do a grep 'param(' and check them out.
  • Adjust web timeout!?? Seemed to have pooped at 2 minutes...? Done
  • PepXMLViewer: BAD link to SpectraST ("ST")
  • Petunia icon on desktop and all pages!
    • Window's quirk? Sometimes I see this sometimes I don't. The code in the installer looks solid.
  • tpp_models: bad links to js/ resources ("/ISB/html...")
    • missing jquery.flot.errorbars.js
  • ProtXMLViewer fails...(bad gateway)
  • Old ProtXMLViewer fails too: system cannot find the path specified
  • updatepaths does not seem to do anything, no output, even with -vv
  • mzIdent conversion fails
  • Petunia::Issue when selecting a directory from quick-select drop-down
  • decoyFastaGenerator.pl does not launch from Petunia
  • Downloading Spectral Libs fails, yet again: bad paths to md5sum, wget, and unzip

Release 5.0.0a1

  • Merge last set of trunk changes into branch
  • Review one last time what's in external. Ditch unneeded stuff.
  • Add instructions on wiki on how to use your own Perl/Apache
    • (Joe) warn users if they choose not to install perl or appweb
  • Luis says the TPP icon is ugly and use the purple flower instead
  • Update linux scripts in installer_linux
  • Update BUILD_LINUX. Especially Apache instructions
  • Luis says msconvert fails.
    • Luis is right<\s>
  • <s>README opens poorly in Notepad (needs DOS line endings)
  • Move tools params from /conf to data/param(eter)s/
    • They need to be accessible from Petunia/web browser
    • Which files? taxonomy.xml and tandem_params.xml only? or more?
  • Attempted to access forbidden directory error when selecting files and adding them. It's comparing $data_dir with param('workingdir'). One has a '/' on it and one doesn't.
  • Keep an eye out for "this page failed" in Petunia when submitting forms. If prompted resend try it a couple of times. If the page appears check the bottom of the page out. There may be a message about security and the params() function. If so note the line #. I've gone through tpp_gui.pl trying to fix all of these calls but apparently have missed some.
  • Create data/dbase/speclibs/ dir, if not present
  • PWiz -lrt issue on Windows
  • Upgrade comet
  • Upgrade pwiz-win32
Retrieved from "http://tools.proteomecenter.org/wiki/index.php?title=TPP:V5Feedback"
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