Software:SWATHProphet
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| ==Overview== | ==Overview== | ||
| - | SWATH Prophet is a software tool for the analysis of SWATH (DIA) data. | + | SWATH Prophet is a software tool for the analysis of SWATH (DIA) data. |
| ==Manuscript == | ==Manuscript == | ||
| - | Automated Validation of Results and Removal of Fragment Ion Interferences in Targeted Analysis of Data Independent Acquisition MS using SWATHProphet, Molecular and Cellular Proteomics, in press. | + | Automated Validation of Results and Removal of Fragment Ion Interferences in Targeted Analysis of Data Independent Acquisition MS using SWATHProphet, Molecular and Cellular Proteomics, in press. |
| ==Obtaining the software== | ==Obtaining the software== | ||
| - | Via SVN: | + | Via SVN: |
| - website: https://sourceforge.net/p/sashimi/code/HEAD/tree/trunk/SWATHProphet/ | - website: https://sourceforge.net/p/sashimi/code/HEAD/tree/trunk/SWATHProphet/ | ||
| - export: svn export https://svn.code.sf.net/p/sashimi/code/trunk/SWATHProphet SWATHProphet | - export: svn export https://svn.code.sf.net/p/sashimi/code/trunk/SWATHProphet SWATHProphet | ||
| - | Via HTTP: | + | Via HTTP: |
| - https://sourceforge.net/projects/sashimi/files/SWATHProphet/ | - https://sourceforge.net/projects/sashimi/files/SWATHProphet/ | ||
| Line 21: | Line 21: | ||
| ==Running the software== | ==Running the software== | ||
| - | There is a tutorial checked into the codebase, which can be obtained as outlined above. The tutorial can also be downloaded directly[https://sourceforge.net/p/sashimi/code/HEAD/tree/trunk/SWATHProphet/Tutorial.docx here ]. | + | There is a tutorial checked into the codebase, which can be obtained as outlined above. The tutorial can also be downloaded directly[https://sourceforge.net/p/sashimi/code/HEAD/tree/trunk/SWATHProphet/Tutorial.docx here ]. |
| - | + | ||
| - | The dataset used in the example can be downloaded from SWATH Atlas [http://www.swathatlas.org/etc/20130520_urine_1-1.mzXML.gz here] | + | |
| - | + | ||
| + | The dataset used in the example can be downloaded from SWATH Atlas [http://www.swathatlas.org/etc/20130520_urine_1-1.mzXML.gz here] | ||
| ==Author== | ==Author== | ||
| - | Andy Keller | + | Andy Keller |
Revision as of 23:31, 23 February 2015
Contents |
Overview
SWATH Prophet is a software tool for the analysis of SWATH (DIA) data.
Manuscript
Automated Validation of Results and Removal of Fragment Ion Interferences in Targeted Analysis of Data Independent Acquisition MS using SWATHProphet, Molecular and Cellular Proteomics, in press.
Obtaining the software
Via SVN:
- website: https://sourceforge.net/p/sashimi/code/HEAD/tree/trunk/SWATHProphet/
- export: svn export https://svn.code.sf.net/p/sashimi/code/trunk/SWATHProphet SWATHProphet
Via HTTP:
- https://sourceforge.net/projects/sashimi/files/SWATHProphet/
Running the software
There is a tutorial checked into the codebase, which can be obtained as outlined above. The tutorial can also be downloaded directlyhere .
The dataset used in the example can be downloaded from SWATH Atlas here
Author
Andy Keller
