TPP 4.3.1: Installing on Ubuntu 10.04

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Revision as of 17:49, 20 May 2010 Jesse j (Talk | contribs) (→Installation Procedure) ← Previous diff		Current revision JoeS (Talk | contribs)
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		+	{| style="border-collapse: separate; border-spacing: 2; border-width: 1px; border-style: solid; border-color: #000; padding: 4px;"
		+	|[[Image:alert.jpg|middle|left]]
		+	| For TPP versions 4.8 and later please see the README and INSTALL_LINUX files found in source code distribution for instructions on how to build TPP for the Linux platform.
		+	|}
		+	<br>
		+
	== Installation Procedure ==		== Installation Procedure ==
-	Note: This is not the only way to install TPP, and these instructions have not yet been tested by other users. If you don't have subversion, do: sudo aptitude install subversion	+	* If you don't have subversion, do: sudo aptitude install subversion
		+
		+	Note: This is not the only way to install TPP, and these instructions have not yet been tested by other users.
	<pre>		<pre>
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	cd /usr/local/src/		cd /usr/local/src/
	svn co https://sashimi.svn.sourceforge.net/svnroot/sashimi/tags/release_4-3-1/trans_proteomic_pipeline/		svn co https://sashimi.svn.sourceforge.net/svnroot/sashimi/tags/release_4-3-1/trans_proteomic_pipeline/
-	cd installer_linux/	+	cd trans_proteomic_pipeline/installer_linux/
	sh ./install-prerequisites-ubuntu-9_04.sh		sh ./install-prerequisites-ubuntu-9_04.sh
-	cd ../trans_proteomic_pipeline/src/	+	cd ../src/
	make		make
	make install		make install
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	* If Make reports an error in saxhandler.h, add "#include <stdint.h>" (Without the quotation marks) to the top of the saxhandler.h file.		* If Make reports an error in saxhandler.h, add "#include <stdint.h>" (Without the quotation marks) to the top of the saxhandler.h file.
		+	** src/Parsers/Algorithm2XML/saxhandler.h
		+	** extern/xtandem/src/saxhandler.h

---

Current revision

For TPP versions 4.8 and later please see the README and INSTALL_LINUX files found in source code distribution for instructions on how to build TPP for the Linux platform.

Installation Procedure

• If you don't have subversion, do: sudo aptitude install subversion

Note: This is not the only way to install TPP, and these instructions have not yet been tested by other users.

#If admin permission is needed, enter the command: sudo bash
cd /usr/local/src/
svn co https://sashimi.svn.sourceforge.net/svnroot/sashimi/tags/release_4-3-1/trans_proteomic_pipeline/
cd trans_proteomic_pipeline/installer_linux/
sh ./install-prerequisites-ubuntu-9_04.sh

cd ../src/
make
make install

Debugging

• If Make reports an error in saxhandler.h, add "#include <stdint.h>" (Without the quotation marks) to the top of the saxhandler.h file.
  • src/Parsers/Algorithm2XML/saxhandler.h
  • extern/xtandem/src/saxhandler.h