TPP 4.3.1: Installing on Ubuntu 10.04
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- | === Installation Procedure === | + | {| style="border-collapse: separate; border-spacing: 2; border-width: 1px; border-style: solid; border-color: #000; padding: 4px;" |
+ | |[[Image:alert.jpg|middle|left]] | ||
+ | | For TPP versions 4.8 and later please see the README and INSTALL_LINUX files found in source code distribution for instructions on how to build TPP for the Linux platform. | ||
+ | |} | ||
+ | <br> | ||
+ | == Installation Procedure == | ||
+ | |||
+ | * If you don't have subversion, do: sudo aptitude install subversion | ||
+ | |||
+ | Note: This is not the only way to install TPP, and these instructions have not yet been tested by other users. | ||
<pre> | <pre> | ||
+ | #If admin permission is needed, enter the command: sudo bash | ||
cd /usr/local/src/ | cd /usr/local/src/ | ||
svn co https://sashimi.svn.sourceforge.net/svnroot/sashimi/tags/release_4-3-1/trans_proteomic_pipeline/ | svn co https://sashimi.svn.sourceforge.net/svnroot/sashimi/tags/release_4-3-1/trans_proteomic_pipeline/ | ||
- | cd trans_proteomic_pipeline/src/ | + | cd trans_proteomic_pipeline/installer_linux/ |
+ | sh ./install-prerequisites-ubuntu-9_04.sh | ||
- | #The following commands may need to be prefaced with the sudo command | + | cd ../src/ |
make | make | ||
make install | make install | ||
</pre> | </pre> | ||
- | |||
== Debugging == | == Debugging == | ||
* If Make reports an error in saxhandler.h, add "#include <stdint.h>" (Without the quotation marks) to the top of the saxhandler.h file. | * If Make reports an error in saxhandler.h, add "#include <stdint.h>" (Without the quotation marks) to the top of the saxhandler.h file. | ||
+ | ** src/Parsers/Algorithm2XML/saxhandler.h | ||
+ | ** extern/xtandem/src/saxhandler.h |
Current revision
For TPP versions 4.8 and later please see the README and INSTALL_LINUX files found in source code distribution for instructions on how to build TPP for the Linux platform. |
[edit]
Installation Procedure
- If you don't have subversion, do: sudo aptitude install subversion
Note: This is not the only way to install TPP, and these instructions have not yet been tested by other users.
#If admin permission is needed, enter the command: sudo bash cd /usr/local/src/ svn co https://sashimi.svn.sourceforge.net/svnroot/sashimi/tags/release_4-3-1/trans_proteomic_pipeline/ cd trans_proteomic_pipeline/installer_linux/ sh ./install-prerequisites-ubuntu-9_04.sh cd ../src/ make make install
[edit]
Debugging
- If Make reports an error in saxhandler.h, add "#include <stdint.h>" (Without the quotation marks) to the top of the saxhandler.h file.
- src/Parsers/Algorithm2XML/saxhandler.h
- extern/xtandem/src/saxhandler.h