TPP 4.3.1: Installing on Ubuntu 10.04

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-=== Installation Procedure ===+{| style="border-collapse: separate; border-spacing: 2; border-width: 1px; border-style: solid; border-color: #000; padding: 4px;"
 +|[[Image:alert.jpg|middle|left]]
 +| For TPP versions 4.8 and later please see the README and INSTALL_LINUX files found in source code distribution for instructions on how to build TPP for the Linux platform.
 +|}
 +<br>
 +== Installation Procedure ==
 +
 +* If you don't have subversion, do: sudo aptitude install subversion
 +
 +Note: This is not the only way to install TPP, and these instructions have not yet been tested by other users.
<pre> <pre>
 +#If admin permission is needed, enter the command: sudo bash
cd /usr/local/src/ cd /usr/local/src/
svn co https://sashimi.svn.sourceforge.net/svnroot/sashimi/tags/release_4-3-1/trans_proteomic_pipeline/ svn co https://sashimi.svn.sourceforge.net/svnroot/sashimi/tags/release_4-3-1/trans_proteomic_pipeline/
-cd trans_proteomic_pipeline/src/+cd trans_proteomic_pipeline/installer_linux/
 +sh ./install-prerequisites-ubuntu-9_04.sh
-#The following commands may need to be prefaced with the sudo command+cd ../src/
make make
make install make install
</pre> </pre>
- 
== Debugging == == Debugging ==
* If Make reports an error in saxhandler.h, add "#include <stdint.h>" (Without the quotation marks) to the top of the saxhandler.h file. * If Make reports an error in saxhandler.h, add "#include <stdint.h>" (Without the quotation marks) to the top of the saxhandler.h file.
 +** src/Parsers/Algorithm2XML/saxhandler.h
 +** extern/xtandem/src/saxhandler.h

Current revision

middle
For TPP versions 4.8 and later please see the README and INSTALL_LINUX files found in source code distribution for instructions on how to build TPP for the Linux platform.


Installation Procedure

  • If you don't have subversion, do: sudo aptitude install subversion

Note: This is not the only way to install TPP, and these instructions have not yet been tested by other users.

#If admin permission is needed, enter the command: sudo bash
cd /usr/local/src/
svn co https://sashimi.svn.sourceforge.net/svnroot/sashimi/tags/release_4-3-1/trans_proteomic_pipeline/
cd trans_proteomic_pipeline/installer_linux/
sh ./install-prerequisites-ubuntu-9_04.sh

cd ../src/
make
make install

Debugging

  • If Make reports an error in saxhandler.h, add "#include <stdint.h>" (Without the quotation marks) to the top of the saxhandler.h file.
    • src/Parsers/Algorithm2XML/saxhandler.h
    • extern/xtandem/src/saxhandler.h
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