TPP:Supported Search Engines
From SPCTools
| Revision as of 18:31, 20 June 2007 Jtasman (Talk | contribs) ← Previous diff |
Current revision Dshteynb (Talk | contribs) (→supported search engines) |
||
| Line 1: | Line 1: | ||
| + | ==what is a search engine?== | ||
| + | In this context, a "search engine" is a tool that attempts to assign a peptide sequence to a MS/MS (or MS2) | ||
| + | spectra. | ||
| + | |||
| ==supported search engines== | ==supported search engines== | ||
| + | The TPP now officially works with these search engines: | ||
| + | |||
| + | ===COMET=== | ||
| + | [http://comet-ms.sourceforge.net/ COMET] open-source database search engine provided with TPP (as of version 4.7.1) | ||
| + | |||
| + | ===[[TPP:X!Tandem and the TPP|X!Tandem]]=== | ||
| + | [http://www.thegpm.org/TANDEM/ X!Tandem] is a open-source, free search engine. X!Tandem with the K-Score plugin is now distributed as part of the Windows TPP (as of version 3.2.1). | ||
| + | |||
| + | ===[[TPP:Sequest and the TPP|SEQUEST]]=== | ||
| + | [http://fields.scripps.edu/sequest/ SEQUEST] is a commercial search engine, currently sold by Thermo. | ||
| + | |||
| + | ===MSGF+=== | ||
| + | [http://proteomics.ucsd.edu/software-tools/ms-gf/ MSGF+] | ||
| + | |||
| + | ===Inspect=== | ||
| + | [http://proteomics.ucsd.edu/software-tools/inspectms-alignment/ Inspect] | ||
| + | |||
| + | ===OMSSA=== | ||
| + | [http://www.ncbi.nlm.nih.gov/Web/Newsltr/V14N2/index.html OMSSA] | ||
| - | [[TPP:Sequest and the TPP|Sequest]] | + | ===MyriMatch=== |
| + | [http://forge.fenchurch.mc.vanderbilt.edu/scm/viewvc.php/*checkout*/trunk/doc/index.html?root=myrimatch MyriMatch] open-source tandem mass spectral peptide identification by multivariate hypergeometric analysis | ||
| - | [[TPP:Mascot and the TPP|Mascot]] | + | ===[[TPP:ProbID and the TPP|ProbID]]=== |
| + | [[Software:ProbID|ProbID]]is an open-source, freely-available SPC developed search engine. | ||
| - | [[TPP:X!Tandem and the TPP|X!Tandem]] | + | ===[[TPP:Mascot and the TPP|Mascot]]=== |
| + | [http://www.matrixscience.com/ Mascot] is a commercial search engine, distributed by Matrix Science. | ||
| - | [[TPP:Phenyx and the TPP|Phenynx]] | + | ===[[TPP:Phenyx and the TPP|Phenyx]]=== |
| + | [http://www.phenyx-ms.com/ Phenyx] is a commercial search engine. | ||
Current revision
Contents |
what is a search engine?
In this context, a "search engine" is a tool that attempts to assign a peptide sequence to a MS/MS (or MS2) spectra.
supported search engines
The TPP now officially works with these search engines:
COMET
COMET open-source database search engine provided with TPP (as of version 4.7.1)
X!Tandem
X!Tandem is a open-source, free search engine. X!Tandem with the K-Score plugin is now distributed as part of the Windows TPP (as of version 3.2.1).
SEQUEST
SEQUEST is a commercial search engine, currently sold by Thermo.
MSGF+
Inspect
OMSSA
MyriMatch
MyriMatch open-source tandem mass spectral peptide identification by multivariate hypergeometric analysis
ProbID
ProbIDis an open-source, freely-available SPC developed search engine.
Mascot
Mascot is a commercial search engine, distributed by Matrix Science.
Phenyx
Phenyx is a commercial search engine.
