TPP:Authors and Contributors
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| The Trans-Proteomic Pipeline (TPP) is a collaborative open-source project. It was originally started at the Institute for Systems Biology (ISB) in the Aebersold Lab. The project has since grown, with active contributors from institutions all over the world. The ISB continues to provide primary support for the project, with other primary collaborators and contributors at Insilicos LLC, the University of Washington, Fred Hutch Cancer Research Center, and the University of Hong Kong. | The Trans-Proteomic Pipeline (TPP) is a collaborative open-source project. It was originally started at the Institute for Systems Biology (ISB) in the Aebersold Lab. The project has since grown, with active contributors from institutions all over the world. The ISB continues to provide primary support for the project, with other primary collaborators and contributors at Insilicos LLC, the University of Washington, Fred Hutch Cancer Research Center, and the University of Hong Kong. | ||
| - | (TODO: add note about many people contributing from newsgroup) | + | Alphabetical by last name (current affiliation, if known): major work |
| - | == primary authors == | + | == primary authors (active) == |
| - | Alphabetical by last name (current affiliation, if known): major work | + | * Jimmy Eng (University of Washington, ISB): MS/MS spectra-to-peptide identification (SEQUEST) |
| + | * Henry Lam (Hong Kong University of Science and Technology): spectral library search (SpectraST) | ||
| + | * Luis Mendoza (ISB): graphic interface (Petunia) | ||
| + | * Alexey Nesvizhskii (University of Michigan): statistical tools | ||
| + | * Brian Pratt (Insilicos): optimization, data formats, windows installation | ||
| + | * David Shteynberg (ISB): statistical tools within the TPP | ||
| + | * Joe Slagel: cloud-based (AWS) workflow management | ||
| + | * Natalie Tasman (Insilicos): cross-platform build and release and installation, data visualization, raw format conversion | ||
| + | |||
| + | |||
| + | == other primary authors == | ||
| * James Eddes: MS spectra curation and quality assesment (QualScore) | * James Eddes: MS spectra curation and quality assesment (QualScore) | ||
| - | * Jimmy Eng (University of Washington, ISB): MS/MS spectra-to-peptide identification (SEQUEST) | ||
| * Robert Hubley: original creator of cygwin-based Windows TPP distribution | * Robert Hubley: original creator of cygwin-based Windows TPP distribution | ||
| * Andrew Keller: statistical tools | * Andrew Keller: statistical tools | ||
| * Nichole King: iTRAQ-labeled quantification (Libra) | * Nichole King: iTRAQ-labeled quantification (Libra) | ||
| - | * Henry Lam (Hong Kong University of Science and Technology): spectral library search (SpectraST) | ||
| * Xiao-jun Li: quantification (ASAPRatio) | * Xiao-jun Li: quantification (ASAPRatio) | ||
| - | * Luis Mendoza (ISB): graphic interface (Petunia) | + | * Brendan Ma |
| - | * Alexey Nesvizhskii (University of Michigan): statistical tools | + | |
| * Patrick Pedrioli: mzXML open format creator, original work on file conversion | * Patrick Pedrioli: mzXML open format creator, original work on file conversion | ||
| - | * Brian Pratt (Insilicos): optimization, data formats | ||
| - | * David Shteynberg (ISB): statistical tools within the TPP | ||
| - | * Joe Slagel: cloud-based (AWS) workflow management | ||
| - | * Natalie Tasman (Insilicos): cross-platform build and release, data visualization, raw format conversion | ||
| * Ning Zhang: ProbID search engine (ProbID) | * Ning Zhang: ProbID search engine (ProbID) | ||
| - | == significant contributors and collaborators == | ||
| - | * Chee-Hong | + | == significant contributors and collaborators == |
| + | * Chee-Hong Wong (Fred Hutch Cancer Research Center): data format conversion (mzWiff) | ||
| * ProteoWizard project (describe project relationship) | * ProteoWizard project (describe project relationship) | ||
| - | |||
| * Labkey (formerly CPAS) | * Labkey (formerly CPAS) | ||
| - | |||
| * X!Tandem | * X!Tandem | ||
| + | * Aebersold Lab Seattle (ISB) and Zurich: support, testing, feedback | ||
| + | |||
| == other contributors == | == other contributors == | ||
| - | * Rune (masswolf) | + | * Rune P: special processing in massWolf |
| + | * Sergey Doronin: CProbID: c-language implementation of ProbID search engine | ||
| + | |||
| - | * TODO: people from the newsgroup | + | * and all of the many people from the newsgroup who have contributed patches, bug reports, |
Revision as of 20:30, 28 June 2010
The Trans-Proteomic Pipeline (TPP) is a collaborative open-source project. It was originally started at the Institute for Systems Biology (ISB) in the Aebersold Lab. The project has since grown, with active contributors from institutions all over the world. The ISB continues to provide primary support for the project, with other primary collaborators and contributors at Insilicos LLC, the University of Washington, Fred Hutch Cancer Research Center, and the University of Hong Kong.
Alphabetical by last name (current affiliation, if known): major work
Contents |
primary authors (active)
- Jimmy Eng (University of Washington, ISB): MS/MS spectra-to-peptide identification (SEQUEST)
- Henry Lam (Hong Kong University of Science and Technology): spectral library search (SpectraST)
- Luis Mendoza (ISB): graphic interface (Petunia)
- Alexey Nesvizhskii (University of Michigan): statistical tools
- Brian Pratt (Insilicos): optimization, data formats, windows installation
- David Shteynberg (ISB): statistical tools within the TPP
- Joe Slagel: cloud-based (AWS) workflow management
- Natalie Tasman (Insilicos): cross-platform build and release and installation, data visualization, raw format conversion
other primary authors
- James Eddes: MS spectra curation and quality assesment (QualScore)
- Robert Hubley: original creator of cygwin-based Windows TPP distribution
- Andrew Keller: statistical tools
- Nichole King: iTRAQ-labeled quantification (Libra)
- Xiao-jun Li: quantification (ASAPRatio)
- Brendan Ma
- Patrick Pedrioli: mzXML open format creator, original work on file conversion
- Ning Zhang: ProbID search engine (ProbID)
significant contributors and collaborators
- Chee-Hong Wong (Fred Hutch Cancer Research Center): data format conversion (mzWiff)
- ProteoWizard project (describe project relationship)
- Labkey (formerly CPAS)
- X!Tandem
- Aebersold Lab Seattle (ISB) and Zurich: support, testing, feedback
other contributors
- Rune P: special processing in massWolf
- Sergey Doronin: CProbID: c-language implementation of ProbID search engine
- and all of the many people from the newsgroup who have contributed patches, bug reports,
