Software:RemoteConvert
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| - | Software: RemoteConvert | + | '''RemoteConvert: TConvert the raw file remotely.''' |
| - | Convert the raw file remotely. | + | |
| + | ==Description== | ||
| - | Description | ||
| Because several conversion programs depend on Windows-only vendor libraries from different manufacture, this software will enable you converting your raw files in you local machine without logging in to remote window machine. | Because several conversion programs depend on Windows-only vendor libraries from different manufacture, this software will enable you converting your raw files in you local machine without logging in to remote window machine. | ||
| - | Requirements | + | ==Requirements== |
| - | The following is a list of software need to be installed in window machine before you can convert each type of the raw file. | + | The following is a list of software need to be installed in window machine before you can convert each type of the raw file. |
| - | Raw file type Raw-to-mzXML/mzML converter Software | + | |
| - | .RAW file ReAdw | + | |
| - | Thermo's XCalibur software | + | |
| - | raw dir massWolf | + | |
| - | Waters' MassLynx software | + | |
| - | .Wiff file mzWiff | + | |
| - | Analyst software | + | |
| - | .Wiff file ML_Exporter | + | |
| - | .baf file CompassXport CompassXport, produced by Bruker | + | |
| + | ==How to use it== | ||
| + | Suppose the remote window machine is named[[ R machine]]. The local linux machine is named [[L machine]]. | ||
| - | How to use it: | ||
| - | |||
| - | Suppose the remote window machine is named R machine. The local linux machine is named L machine. | ||
| On R machine: | On R machine: | ||
| + | |||
| mkdir C:\convert | mkdir C:\convert | ||
| Download converter executable and save into C:\convert | Download converter executable and save into C:\convert | ||
| Line 28: | Line 19: | ||
| cd C:\convert | cd C:\convert | ||
| perl RemoteConvertServer.pl | perl RemoteConvertServer.pl | ||
| + | |||
| On L machine: | On L machine: | ||
| + | |||
| Download remoteconvert.pl and save into some dir. | Download remoteconvert.pl and save into some dir. | ||
| ./ remoteconvert.pl : show some examples command to run the software. | ./ remoteconvert.pl : show some examples command to run the software. | ||
| ./ remoteconvert.pl –showoptions: show all options available for each converter | ./ remoteconvert.pl –showoptions: show all options available for each converter | ||
| - | Install RemoteConvert as service: | + | ==Install RemoteConvert as service== |
| The service will stop if the user session is time out or the window machine is restarted. I complied the perl code into a executable using triall version of perl2exe, and installed it as service on a window 2000 and a window server 2003 sucessfully, thus the service will keep running without user log in and restart by itself after the computer restarts. | The service will stop if the user session is time out or the window machine is restarted. I complied the perl code into a executable using triall version of perl2exe, and installed it as service on a window 2000 and a window server 2003 sucessfully, thus the service will keep running without user log in and restart by itself after the computer restarts. | ||
| - | Instructions on install user defined service: | + | |
| + | ==Instructions on install user defined service== | ||
| Use perl2exe or other software to convert the perl program (server side) to exectuable. | Use perl2exe or other software to convert the perl program (server side) to exectuable. | ||
| Suppose your perl executable is located in C:\convert | Suppose your perl executable is located in C:\convert | ||
| Line 70: | Line 64: | ||
| on popup window, click start | on popup window, click start | ||
| - | Getting the software: | + | '''This software is included in the current [[Software:TPP|TPP]] distribution.''' |
| - | This software is included in the current TPP distribution. | + | |
| - | Additional methods for obtaining the software are: | + | Additional methods for obtaining the software are: |
| - | Download from SourceForge Sashimi project file release: [1] | + | *Download from SourceForge Sashimi project file release: [] |
| - | Browse sourcecode from on Sashimi project SVN[2]. | + | *Browse sourcecode from on Sashimi project SVN[]. |
Revision as of 17:34, 4 March 2009
RemoteConvert: TConvert the raw file remotely.
Contents |
Description
Because several conversion programs depend on Windows-only vendor libraries from different manufacture, this software will enable you converting your raw files in you local machine without logging in to remote window machine.
Requirements
The following is a list of software need to be installed in window machine before you can convert each type of the raw file.
How to use it
Suppose the remote window machine is named R machine. The local linux machine is named L machine.
On R machine:
mkdir C:\convert Download converter executable and save into C:\convert Download RemoteConvertServer.pl and lib dir, and save into C:\convert Download 7-zip, unzip and save it into C:\convert\7-zip cd C:\convert perl RemoteConvertServer.pl
On L machine:
Download remoteconvert.pl and save into some dir. ./ remoteconvert.pl : show some examples command to run the software. ./ remoteconvert.pl –showoptions: show all options available for each converter
Install RemoteConvert as service
The service will stop if the user session is time out or the window machine is restarted. I complied the perl code into a executable using triall version of perl2exe, and installed it as service on a window 2000 and a window server 2003 sucessfully, thus the service will keep running without user log in and restart by itself after the computer restarts.
==Instructions on install user defined service==
Use perl2exe or other software to convert the perl program (server side) to exectuable.
Suppose your perl executable is located in C:\convert
1. Download and install resource kit tool from Microsoft website according to which version of window machine you have. Window server 2003:
http://www.microsoft.com/downloads/details.aspx?FamilyID=9D467A69-57FF-4AE7-96EE-B18C4790CFFD&displaylang=en Window 2000: http://www.microsoft.com/downloads/details.aspx?displaylang=en&FamilyID=3e89879d-6c0b-4f92-96c4-1016c187d429 Alternatively if you can get INSTSRV.EXE and SRVANY.EXE somewhere, you don’t need to install the whole resource kit.
Suppose these two executable is located in “C:\reskit” 2. At a MS-DOS command prompt(running CMD.EXE), type the following command: C:\reskit\INSTSRV.EXE RemoteConvert C:\reskit\SRVANY.EXE 3. Run Registry Editor (start|run|regedit) and locate the following subkey:
HKEY_LOCAL_MACHINE\SYSTEM\CurrentControlSet\Services\RemoteConvert
a. From the Edit menu, click New Key. Type the following and click OK:
Key Name: Parameters
Class : <leave blank>
b. Select the Parameters key.
From the Edit menu, click New Value. Type the following and click OK:
Value Name: Application
Data Type: REG_SZ
String: C:\convert\RemoteConvertServer.exe
b. Select the Parameters key
From the Edit menu, click New Value. Type the following and click OK:
Value Name: AppDirectory
Data Type: REG_SZ
String: C:\convert
d. Close Registry Editor.
4: start the service
control panel -> administrative tool -> component service
Find the "RemoteConvert"
Click it
on popup window, click start
This software is included in the current TPP distribution.
Additional methods for obtaining the software are:
- Download from SourceForge Sashimi project file release: []
- Browse sourcecode from on Sashimi project SVN[].
