Terry's compbio links
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| ==Terry Farrah's Computational Biology Links== | ==Terry Farrah's Computational Biology Links== | ||
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| + | ===ISB specific stuff=== | ||
| [http://www.peptideatlas.org Peptide Atlas]: a multi-organism, publicly accessible compendium of peptides identified in a large set of tandem mass spectrometry proteomics experiments. | [http://www.peptideatlas.org Peptide Atlas]: a multi-organism, publicly accessible compendium of peptides identified in a large set of tandem mass spectrometry proteomics experiments. | ||
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| [http://db.systemsbiology.net/devTF/sbeams/cgi/main.cgi db.systemsbiology.net/devTF/sbeams/cgi/main.cgi] Terry's SBeams software development sandbox | [http://db.systemsbiology.net/devTF/sbeams/cgi/main.cgi db.systemsbiology.net/devTF/sbeams/cgi/main.cgi] Terry's SBeams software development sandbox | ||
| - | [http://www.python.org/doc www.python.org/doc]: Helpful links for Python programmers. | + | ===General computational biology stuff=== |
| [http://www.expasy.org/sprot Swiss-Prot] curated protein sequence database | [http://www.expasy.org/sprot Swiss-Prot] curated protein sequence database | ||
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| [[Terry's blog | Terry's blog on improving proteomics peptide and protein identifications]] | [[Terry's blog | Terry's blog on improving proteomics peptide and protein identifications]] | ||
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| + | ===General programming stuff=== | ||
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| + | [http://www.python.org/doc www.python.org/doc]: Helpful links for Python programmers. | ||
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| + | [http://www.gnu.org/software/bash/manual/bashref.html Bash shell reference manual] | ||
Revision as of 16:53, 31 October 2008
Contents |
Terry Farrah's Computational Biology Links
ISB specific stuff
Peptide Atlas: a multi-organism, publicly accessible compendium of peptides identified in a large set of tandem mass spectrometry proteomics experiments.
Terry's notes on how to perform a Peptide Atlas build
Terry's notes on how to install and build the TPP under windows
SBeams: SPC's experimental data storage system. Go here to run an SBeams test drive.
db.systemsbiology.org: Developer's back door into SBeams. Go here to contribute data.
db.systemsbiology.net/devTF/sbeams/cgi/main.cgi Terry's SBeams software development sandbox
General computational biology stuff
Swiss-Prot curated protein sequence database
ftp://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/complete: Download Swiss-Prot and other UniProt databases
Terry's blog on improving proteomics peptide and protein identifications
General programming stuff
www.python.org/doc: Helpful links for Python programmers.
