Software:Mayu
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| - | [placeholder] | + | == Mayu == |
| + | '''Protein Identification False Discovery Rates''' | ||
| + | |||
| + | Mayu is a software package for the analysis of (large) mass spectrometry-based shotgun proteomics data sets. Mayu determines protein identification false discovery rates (protFDR), peptide identification false discovery rates (pepFDR) and peptide-spectrum match false discovery rates (mFDR) using a novel robust and fast strategy. | ||
| + | |||
| + | Mayu is not a search engine and works with any* peptide-spectrum match discriminant score derived from a database search. | ||
| + | |||
| + | This software is licensed under the CC-GNU GPL version 2.0 or later. This software and associated documentation is provided "as is" and there is no warranty for this software. | ||
| + | |||
| + | <nowiki>*</nowiki> if this discriminant score is compatible with target decoy searching | ||
| + | |||
| + | |||
| + | '''Software''' | ||
| + | |||
| + | For running Mayu install a perl interpreter and run the software from the unpacked zip file on a command line. See the manual, pdf for more details. | ||
| + | |||
| + | |||
| + | '''Download''' | ||
| + | |||
| + | <ul> | ||
| + | <li>manual</li> | ||
| + | <li>software package</li> | ||
| + | <li>example data set</li> | ||
| + | <li>perl script to create target decoy databases</li> | ||
| + | </ul> | ||
| + | |||
| + | |||
| + | |||
| + | '''Features''' | ||
| + | |||
| + | <ul> | ||
| + | <li>provides false discovery rates not | ||
| + | only on peptide-spectrum match level (mFDR) but also | ||
| + | on protein identification (protFDR) and peptide | ||
| + | identification (pepFDR) level</li> | ||
| + | <li>false discovery rates for single hits (single | ||
| + | peptide-spectrum match protein identifications) and all but single hits | ||
| + | (protein identifications with more than one peptide-spectrum match)</li> | ||
| + | <li>analysis in dependence of the amount of data</li> | ||
| + | <li>R plots</li> | ||
| + | <li>provides tables for each input file that relate | ||
| + | the discriminant score (e.g. PeptideProphet, xcorr, mascot ion | ||
| + | score,...) to a peptide-spectrum match false discovery rate</li> | ||
| + | </ul> | ||
Revision as of 15:18, 28 October 2008
Mayu
Protein Identification False Discovery Rates
Mayu is a software package for the analysis of (large) mass spectrometry-based shotgun proteomics data sets. Mayu determines protein identification false discovery rates (protFDR), peptide identification false discovery rates (pepFDR) and peptide-spectrum match false discovery rates (mFDR) using a novel robust and fast strategy.
Mayu is not a search engine and works with any* peptide-spectrum match discriminant score derived from a database search.
This software is licensed under the CC-GNU GPL version 2.0 or later. This software and associated documentation is provided "as is" and there is no warranty for this software.
* if this discriminant score is compatible with target decoy searching
Software
For running Mayu install a perl interpreter and run the software from the unpacked zip file on a command line. See the manual, pdf for more details.
Download
- manual
- software package
- example data set
- perl script to create target decoy databases
Features
- provides false discovery rates not only on peptide-spectrum match level (mFDR) but also on protein identification (protFDR) and peptide identification (pepFDR) level
- false discovery rates for single hits (single peptide-spectrum match protein identifications) and all but single hits (protein identifications with more than one peptide-spectrum match)
- analysis in dependence of the amount of data
- R plots
- provides tables for each input file that relate the discriminant score (e.g. PeptideProphet, xcorr, mascot ion score,...) to a peptide-spectrum match false discovery rate
