Terry's compbio links
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| [http://www.peptideatlas.org Peptide Atlas]: a multi-organism, publicly accessible compendium of peptides identified in a large set of tandem mass spectrometry proteomics experiments. | [http://www.peptideatlas.org Peptide Atlas]: a multi-organism, publicly accessible compendium of peptides identified in a large set of tandem mass spectrometry proteomics experiments. | ||
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| + | [[Building Peptide Atlas | Terry's notes on how to perform a Peptide Atlas build]] | ||
| [http://www.sbeams.org SBeams]: SPC's experimental data storage system. Go here to run an SBeams test drive. | [http://www.sbeams.org SBeams]: SPC's experimental data storage system. Go here to run an SBeams test drive. | ||
Revision as of 17:35, 17 October 2008
Terry Farrah's Computational Biology Links
Peptide Atlas: a multi-organism, publicly accessible compendium of peptides identified in a large set of tandem mass spectrometry proteomics experiments.
Terry's notes on how to perform a Peptide Atlas build
SBeams: SPC's experimental data storage system. Go here to run an SBeams test drive.
db.systemsbiology.org: Developer's back door into SBeams. Go here to contribute data.
db.systemsbiology.net/devTF/sbeams/cgi/main.cgi Terry's SBeams software development sandbox
www.python.org/doc: Helpful links for Python programmers.
Swiss-Prot curated protein sequence database
ftp://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/complete: Download Swiss-Prot and other UniProt databases
Terry's blog on improving proteomics peptide and protein identifications
