Software:msBID
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| ==Description== | ==Description== | ||
| - | msBID is a java package designated for label-free LC-MS based comparative proteomic analysis. There are four modules in the package. *Detection of peptide features from MS1.*Map identified peptides from MS2 to the features detected from MS1.*Alignment of peptide features from multiple LC-MS experiments.*Normalize the feature intensities due to systematic variations. *The output from msBID can be readily analyzed by BAMarray [http://ora.ra.cwru.edu/bamarray] for selecting the differentially expressed peptides. | + | msBID is a java package designated for label-free LC-MS based comparative proteomic analysis. There are four modules in the package. |
| + | * Detection of peptide features from MS1. | ||
| + | * Map identified peptides from MS2 to the features detected from MS1. | ||
| + | * Alignment of peptide features from multiple LC-MS experiments. | ||
| + | * Normalize the feature intensities due to systematic variations. | ||
| + | * The output from msBID can be readily analyzed by BAMarray [http://ora.ra.cwru.edu/bamarray] for selecting the differentially expressed peptides. | ||
| + | |||
| + | ==Environment to run the software== | ||
| + | You need | ||
| + | * JDK1.6 or Jre1.6 [http://java.sun.com/javase/downloads/index.jsp] | ||
| + | * R [http://cran.r-project.org/] | ||
| + | * Perl | ||
| == | == | ||
Revision as of 19:25, 17 April 2008
Getting the software
- Please download version 1 of this software for LINUX here
- Please download version 1 of this software for Windows here
Description
msBID is a java package designated for label-free LC-MS based comparative proteomic analysis. There are four modules in the package.
- Detection of peptide features from MS1.
- Map identified peptides from MS2 to the features detected from MS1.
- Alignment of peptide features from multiple LC-MS experiments.
- Normalize the feature intensities due to systematic variations.
- The output from msBID can be readily analyzed by BAMarray [1] for selecting the differentially expressed peptides.
Environment to run the software
You need
==
