Software:Pep3D

From SPCTools

Revision as of 18:42, 9 April 2007 Jtasman (Talk | contribs) ← Previous diff		Current revision Jtasman (Talk | contribs)
Line 1:		Line 1:
-	This software is included in the current TPP distribution.	+	==Getting the software==
		+	'''This software is included in the current [[Software:TPP|TPP]] distribution.'''
-	Reference: Li X-J, Pedrioli PGA, Eng J, Martin D, Yi EC, Lee H, Aebersold R. (2004) "A tool to visualize and evaluate data obtained by liquid chromatography / electrospray ionization / mass spectrometry." Anal Chem 76:3856-60.	+	==In a nutshell==
		+	View LC-MS and LC-MS/MS results in a 2D mz vs. time plot.
		+
		+	==More detail==
		+	If identifications are available via an INTERACT or pepXML Viewer interface with PeptideProphet results, sequencing attempts and identification quality are overlayed on the plot; each spot is then a hyperlink to the ms/ms spectrum and identification. The results can be used to evaluate data quality among its many applications.
		+
		+	==Reference==
		+	Li X-J, Pedrioli PGA, Eng J, Martin D, Yi EC, Lee H, Aebersold R. (2004) "A tool to visualize and evaluate data obtained by liquid chromatography / electrospray ionization / mass spectrometry." Anal Chem 76:3856-60.
	[http://tools.proteomecenter.org/publications/Li-Pep3D.pdf download PDF]		[http://tools.proteomecenter.org/publications/Li-Pep3D.pdf download PDF]
		+
		+	The link to the supplemental information referenced in the manuscript is incorrect. Here's the [http://pubs3.acs.org/acs/journals/supporting_information.page?in_manuscript=ac035375s correct link to the supplemental information].
		+
		+
		+	[[image:pep3d.jpg]]

---

Current revision

Contents 1 Getting the software 2 In a nutshell 3 More detail 4 Reference

Getting the software

This software is included in the current TPP distribution.

In a nutshell

View LC-MS and LC-MS/MS results in a 2D mz vs. time plot.

More detail

If identifications are available via an INTERACT or pepXML Viewer interface with PeptideProphet results, sequencing attempts and identification quality are overlayed on the plot; each spot is then a hyperlink to the ms/ms spectrum and identification. The results can be used to evaluate data quality among its many applications.

Reference

Li X-J, Pedrioli PGA, Eng J, Martin D, Yi EC, Lee H, Aebersold R. (2004) "A tool to visualize and evaluate data obtained by liquid chromatography / electrospray ionization / mass spectrometry." Anal Chem 76:3856-60. download PDF

The link to the supplemental information referenced in the manuscript is incorrect. Here's the correct link to the supplemental information.