TPP:X!Tandem and the TPP
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| ==Using X!Tandem and the TPP== | ==Using X!Tandem and the TPP== | ||
| - | This page is intended to give instructions for various ways of working with X!Tandem and the TPP. | + | This page is intended to give instructions for various ways of working with X!Tandem and the TPP. Currently, we continue to refine the PeptideProphet models for X!Tandem-Kscore. While X!Tandem data will run through the pipeline without error, results are non-optimal. Also, we do not yet support X!Tandem in the GUI. |
| ==Running X!Tandem== | ==Running X!Tandem== | ||
Revision as of 17:58, 22 June 2007
Contents |
What is X!Tandem?
X!Tandem is an open-source (and free) search engine, developed by the GPM.
What is the K-Score?
Using X!Tandem and the TPP
This page is intended to give instructions for various ways of working with X!Tandem and the TPP. Currently, we continue to refine the PeptideProphet models for X!Tandem-Kscore. While X!Tandem data will run through the pipeline without error, results are non-optimal. Also, we do not yet support X!Tandem in the GUI.
Running X!Tandem
Someone could contribute info on setting up the params file for Tandem here..
Converting X!Tandem data for the TPP
How to run Tandem2XML, issues with PeptideProphet modeling, etc...
