Software:Pep3D

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 +==Getting the software==
'''This software is included in the current [[Software:TPP|TPP]] distribution.''' '''This software is included in the current [[Software:TPP|TPP]] distribution.'''
-Reference: Li X-J, Pedrioli PGA, Eng J, Martin D, Yi EC, Lee H, Aebersold R. (2004) "A tool to visualize and evaluate data obtained by liquid chromatography / electrospray ionization / mass spectrometry." Anal Chem 76:3856-60.+==In a nutshell==
 +View LC-MS and LC-MS/MS results in a 2D mz vs. time plot.
 + 
 +==More detail==
 +If identifications are available via an INTERACT or pepXML Viewer interface with PeptideProphet results, sequencing attempts and identification quality are overlayed on the plot; each spot is then a hyperlink to the ms/ms spectrum and identification. The results can be used to evaluate data quality among its many applications.
 + 
 +==Reference==
 +Li X-J, Pedrioli PGA, Eng J, Martin D, Yi EC, Lee H, Aebersold R. (2004) "A tool to visualize and evaluate data obtained by liquid chromatography / electrospray ionization / mass spectrometry." Anal Chem 76:3856-60.
[http://tools.proteomecenter.org/publications/Li-Pep3D.pdf download PDF] [http://tools.proteomecenter.org/publications/Li-Pep3D.pdf download PDF]
 +
 +The link to the supplemental information referenced in the manuscript is incorrect. Here's the [http://pubs3.acs.org/acs/journals/supporting_information.page?in_manuscript=ac035375s correct link to the supplemental information].
 +
 +
 +[[image:pep3d.jpg]]

Current revision

Contents

Getting the software

This software is included in the current TPP distribution.

In a nutshell

View LC-MS and LC-MS/MS results in a 2D mz vs. time plot.

More detail

If identifications are available via an INTERACT or pepXML Viewer interface with PeptideProphet results, sequencing attempts and identification quality are overlayed on the plot; each spot is then a hyperlink to the ms/ms spectrum and identification. The results can be used to evaluate data quality among its many applications.

Reference

Li X-J, Pedrioli PGA, Eng J, Martin D, Yi EC, Lee H, Aebersold R. (2004) "A tool to visualize and evaluate data obtained by liquid chromatography / electrospray ionization / mass spectrometry." Anal Chem 76:3856-60. download PDF

The link to the supplemental information referenced in the manuscript is incorrect. Here's the correct link to the supplemental information.


image:pep3d.jpg

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