#/* parameters for doXLINK.pl*/
#/* NOTE: delete parameters for respective crosslinkers BEFORE running SeparateSpec */

precursor_mass_tolerance=1.2
fragment_mass_tolerance=3.0
#output line number
number_of_output_lines=20

#/* PARAMETERS FOR d0/d12-DSS */

#/* mono-link modification mass for DSS */
xlink_group_mass_from_light=156.0786
light_heavy_linker_mass_difference=12.0727

#/* mono_link reporter ion information for DSS */
mono_reporter_ion_MH_from_light_precursor=240.2

#/* cross_link reporter ion information for DSS */
cross_reporter_ion_MH_from_light_precursor=222.1


#/* PARAMETERS FOR d0/d6-DSG */

#/* mono-link modification mass for DSG */
#xlink_group_mass_from_light=114.03169
#light_heavy_linker_mass_difference=6.0364

#/* mono_link reporter ion information for DSG */
#mono_reporter_ion_MH_from_light_precursor=198.2

#/* cross_link reporter ion information for DSG */
#cross_reporter_ion_MH_from_light_precursor=180.1


#/* PARAMETERS FOR d0/d4-BS3 */

#/* mono-link modification mass for BS3 */
#xlink_group_mass_from_light=156.0786
#light_heavy_linker_mass_difference=4.02471

#/* mono_link reporter ion information for BS3 */
#mono_reporter_ion_MH_from_light_precursor=240.2

#/* cross_link reporter ion information for BS3 */
#cross_reporter_ion_MH_from_light_precursor=222.1


#/* PARAMETERS FOR d0/d4-BS2 */

#/* mono-link modification mass for BS2 */
#xlink_group_mass_from_light=114.03169
#light_heavy_linker_mass_difference=4.02471

#/* mono_link reporter ion information for BS2 */
#mono_reporter_ion_MH_from_light_precursor=198.2

#/* cross_link reporter ion information for BS2 */
#cross_reporter_ion_MH_from_light_precursor=180.1